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Copepoda of the World Oceans

There are 2800 species of Copepoda that are commonly found in the World Oceans.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A
All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 2800 total species, 806 of these species (28%) have COI barcodes (from this or any ocean).
  • There are a total of 14599 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
  • MODE
    B
    Regional COI barcodes for this taxa group (includes only those collected in the World Oceans region):
  • Of the 2800 total species, 806 of these species (28%) have World Oceans-collected COI barcodes.
  • There are a total of 14599 "World Oceans-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
  • Uncoded
    Species
    Of the 2800 total species in this region, 1994 species do not have any COI barcodes (from any region).

    Barcoding progress summary for the World Oceans region, out of a total of 2800 possible species:
    • There are COI barcodes for 806 species ( 28% coverage ).
    • There are 12S barcodes for 78 species ( 2% coverage ). 
    • There are 16S barcodes for 171 species ( 6% coverage ).
    • There are 18S barcodes for 509 species ( 18% coverage ).
    • There are 28S barcodes for 405 species ( 14% coverage ).

    Change Region   [ World ] [ Arctic ] [ North Atlantic ] [ South Atlantic ] [ Southern Ocean ] [ Indian Ocean ] [ South Pacific ]
    [ North Pacific ] [ Baltic Sea ] [ Mediterranean Sea ] [ Australia subregion ]
    -----> Click here to go back to the Group Summary page. <-----


    Copepoda of the World Oceans

    MZGdb DATA FILES

    Database-Version:   v2023-m07-15
    --->   Mode-A   <---

    COI barcodes = 14599
    12S barcodes = 147
    16S barcodes = 2595
    18S barcodes = 1303
    28S barcodes = 1039
    Mode-B

    Not Applicable

    B = A for "world"
    Mode-C

    COI records = 16745
    12S records = 156
    16S records = 2693
    18S records = 1649
    28S records = 1176
    Mode-D

    Not Applicable

    D = C for "world"
    FASTA file MZGdb fasta (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb fasta (mode-B)

    not applicable
    MZGdb fasta (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb fasta (mode-D)

    not applicable
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)
    MZGdb Mothur (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb Mothur (mode-B)

    not applicable
    MZGdb Mothur (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb Mothur (mode-D)

    not applicable
    MZGdb v3.0

    "full format"

    go to
    Format Description
    CSV

    Excel-friendly full format
    comma-separated-values
    MZGdb CSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb CSV (mode-B)

    not applicable
    MZGdb CSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb CSV (mode-D)

    not applicable
    PSV

    pipe-separated-values
    MZGdb PSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb PSV (mode-B)

    not applicable
    MZGdb PSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb PSV (mode-D)

    not applicable


    MZGdb Atlas [ database-version = v2023-m07-15 ];   html-date = 2023-Jul-21









    Fri Jul 21 07:25:53 EDT 2023