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Copepoda of the South Pacific

There are 721 species of Copepoda that are commonly found in the South Pacific.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A
All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 721 total species, 268 of these species (37%) have COI barcodes (from this or any ocean).
  • There are a total of 6596 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
  • MODE
    B
    Regional COI barcodes for this taxa group (includes only those collected in the South Pacific region):
  • Of the 721 total species, 0 of these species (0%) have South Pacific-collected COI barcodes.
  • There are a total of 1 "South Pacific-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
  • Uncoded
    Species
    Of the 721 total species in this region, 453 species do not have any COI barcodes (from any region).

    Barcoding progress summary for the South Pacific region, out of a total of 721 possible species:
    • There are COI barcodes for 268 species ( 37% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 12S barcodes for 33 species ( 4% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 86 species ( 11% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 213 species ( 29% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 28S barcodes for 176 species ( 24% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).

    Change Region   [ World ] [ Arctic ] [ North Atlantic ] [ South Atlantic ] [ Southern Ocean ] [ Indian Ocean ] [ South Pacific ]
    [ North Pacific ] [ Baltic Sea ] [ Mediterranean Sea ] [ Australia subregion ]
    -----> Click here to go back to the Group Summary page. <-----


    Copepoda of the South Pacific

    MZGdb DATA FILES

    Database-Version:   v2023-m07-15
    --->   Mode-A   <---

    COI barcodes = 6596
    12S barcodes = 47
    16S barcodes = 1113
    18S barcodes = 509
    28S barcodes = 595
    Mode-B

    COI barcodes = 1
    12S barcodes = 0
    16S barcodes = 0
    18S barcodes = 6
    28S barcodes = 3
    Mode-C

    COI records = 8110
    12S records = 56
    16S records = 1209
    18S records = 689
    28S records = 658
    Mode-D

    COI records = 372
    12S records = 0
    16S records = 0
    18S records = 6
    28S records = 3
    FASTA file MZGdb fasta (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb fasta (mode-B)

    COI | n/d | n/d | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb fasta (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb fasta (mode-D)

    COI | n/d | n/d | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)
    MZGdb Mothur (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb Mothur (mode-B)

    COI | n/d | n/d | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb Mothur (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb Mothur (mode-D)

    COI | n/d | n/d | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)
    MZGdb v3.0

    "full format"

    go to
    Format Description
    CSV

    Excel-friendly full format
    comma-separated-values
    MZGdb CSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb CSV (mode-B)

    COI | n/d | n/d | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb CSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb CSV (mode-D)

    COI | n/d | n/d | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)
    PSV

    pipe-separated-values
    MZGdb PSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb PSV (mode-B)

    COI | n/d | n/d | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb PSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb PSV (mode-D)

    COI | n/d | n/d | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)


    MZGdb Atlas [ database-version = v2023-m07-15 ];   html-date = 2023-Jul-21









    Fri Jul 21 08:56:11 EDT 2023