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All Vertebrates of the Mediterranean Sea

[   World   ]
[   Arctic   ]
[   North Atlantic   ]
[   South Atlantic   ]
[   Southern Ocean   ]
[   Indian Ocean   ]
[   South Pacific   ]
[   North Pacific   ]
[   Baltic Sea   ]
[   Mediterranean Sea   ]
[   Australia subregion   ]
Data Access
Links Table
The data files linked below are all-taxa Reference Compilations.

If you only want data from a single taxa group (e.g., only copepods or diatoms or dolphins),
follow the taxa group links found in the main MZGdb map interface pages.

The "All Invertebrates" files contain data from all of the zooplankton (crustacean+non-crustacean) and benthic taxa groups and subgroups.
The "All Vertebrates" files contain data from all of the fish and megafauna taxa groups and subgroups.
The "All Microbes + Protists" files contain data from all of the phytoplankton (microbes and protists) taxa groups and subgroups.
The "All Marine Fauna + Flora Combo" files contain all data from the All Invertebrates, All Vertebrates, All Microbes + Protists combined files.

The "World (All-World-Oceans)" geographic region includes data from all of the other ocean and seas sub-regions.

The "Mode-A" files contain species-only barcodes for species found in the current ocean, but those sequences may come from any other ocean.
The "Mode-B" files contain species-only barcodes sampled only in the current ocean for species found in the current ocean.
The "Mode-C" files contain genus and/or species sequences for species found in the current ocean, but those sequences may come from any other ocean.
The "Mode-D" files contain genus and/or species sequences sampled only in the current ocean for species found in the current ocean.

The entire MZGdb database is therefore available via the "All Plankton Combo (All-World-Oceans) Mode-A" data files.

MZGdb DATA FILES

Database-Version:   v2023-m07-15
Mode-A

COI barcodes = 20217
12s barcodes = 2632
16s barcodes = 4082
18s barcodes = 245
28s barcodes = 78
Mode-B

COI barcodes = 1119
12s barcodes = 8
16s barcodes = 34
18s barcodes = 0
28s barcodes = 0
Mode-C

COI barcodes = 27304
12s barcodes = 3141
16s barcodes = 4862
18s barcodes = 250
28s barcodes = 189
Mode-D

COI barcodes = 1380
12s barcodes = 18
16s barcodes = 76
18s barcodes = 0
28s barcodes = 42
FASTA file MZGdb fasta (mode-A)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean
(mode-A)
MZGdb fasta (mode-B)

COI | 12S | 16S | n/d | n/d

True "barcode" (species-only) data
from specific ocean
(mode-B)
MZGdb fasta (mode-C)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean
(mode-C)
MZGdb fasta (mode-D)

COI | 12S | 16S | n/d | 28S

Genus-spp and species data
from specific ocean
(mode-D)
Mothur-formatted
Taxonomic Hierarchy file

(paired with FASTA file above)
MZGdb Mothur (mode-A)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean
(mode-A)
MZGdb Mothur (mode-B)

COI | 12S | 16S | n/d | n/d

True "barcode" (species-only) data
from specific ocean
(mode-B)
MZGdb Mothur (mode-C)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean
(mode-C)
MZGdb Mothur (mode-D)

COI | 12S | 16S | n/d | 28S

Genus-spp and species data
from specific ocean
(mode-D)
MZGdb v3.0

"full format"

go to
Format Description
CSV

Excel-friendly full format
comma-separated-values
MZGdb CSV (mode-A)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean
(mode-A)
MZGdb CSV (mode-B)

COI | 12S | 16S | n/d | n/d

True "barcode" (species-only) data
from specific ocean
(mode-B)
MZGdb CSV (mode-C)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean
(mode-C)
MZGdb CSV (mode-D)

COI | 12S | 16S | n/d | 28S

Genus-spp and species data
from specific ocean
(mode-D)
PSV

pipe-separated-values
MZGdb PSV (mode-A)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean
(mode-A)
MZGdb PSV (mode-B)

COI | 12S | 16S | n/d | n/d

True "barcode" (species-only) data
from specific ocean
(mode-B)
MZGdb PSV (mode-C)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean
(mode-C)
MZGdb PSV (mode-D)

COI | 12S | 16S | n/d | 28S

Genus-spp and species data
from specific ocean
(mode-D)











Fri Jul 21 15:49:08 EDT 2023