Alphabetical MOLECULAR Listing
Below is a listing of molecular-related references currently in the LITERATUREdb.

Aylagas, E., Borja, A., Muxika, I., Rodriguez-Ezpeleta, N.   2018.   Adapting metabarcoding-based benthic biomonitoring into routine marine ecological status assessment networks.   Ecological Indicators   95: 194-202.

Journal controls Access (goto DOI-link)       Literature-DB:  L000407    

Baek, S.Y., et-al   2016.   DNA barcoding of metazoan zooplankton copepods from South Korea.   PLOS ONE   11(7): e0157307.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000430    

Blanco-Bercial, L., Alvarez-Marques, F.   2007.   RFLP procedure to discriminate betwee Clausocalanus Giesbrecht, 1888 (Copepoda, Calanoida) species in the Central Cantabrian Sea.   Journal of Experimental Marine Biology and Ecology   344: 73-77.  

Literature-DB:  L000085     [ no PDF available ]

Blanco-Bercial, L., Cornils, A., Copley, N.J., Bucklin, A.   2014.   DNA barcoding of marine copepods: Assessent of analytical approaches to species identification.   PLOS Currents Tree of Life   (2014 Jun 23) Edition 1.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000387    

Braga, E., Zardoya, R., Meyer, A., Yen, J.   1999.   Mitochondrial and nuclear rRNA based copepod phylogeny with emphasis on the Euchaetidae (Calanoida).   Marine Biology   133:79-90.  

Literature-DB:  L000086     [ no PDF available ]

Brylinski, J-M., Li, L-L., Vansteenbruge, L., Antajan, E., Hoffman, S., Van Ginderdeuren, K., Vincent, D.   2016.   Did the Indo-Pacific leptopmedusa Lovenella assimilis (Browne, 1905) or Eucheilota menoni Kram, 1959 invade northern European marine waters? Morphological and genetic approaches.   Aquatic Invasions   11(1): 21-32.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000349    

Bucklin, A., Caudill, C.C., Bentley, A.M.   1998.   Population genetics and phylogeny of marine planktonic copepods.   In Cooksey KC (ed.), Molecular Approaches to the Study of the Ocean. Chapman Hall, London:   303-318.  

Literature-DB:  L000087     [ no PDF available ]

Bucklin, A., Frost, B.W., Bradford-Grieve, J., Allen, P.J., Copley, N.J.   2003.   Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae.   Marine Biology   142: 333-343.  

Literature-DB:  L000088     [ no PDF available ]

Bucklin, A., Hopcroft, R.R., Kosobokova, K., Nigro, L.M., Ortman, B.D., Jennings, R.M., Sweetman, C.J.   2010.   DNA barcoding of Arctic Ocean holozooplankton for species identification and recognition.   Deep Sea Research II   57:40-48.  

Literature-DB:  L000089     [ no PDF available ]

Bucklin, A., Ortman, B.D., Jennings, R.M., Nigro, L.M., Sweetman, C.J., Copley, N.J., Sutton, T., Wiebe, P.H.   2010.   A Rosetta Stone for metazoan zooplankton: DNA barcode analysis of species diversity in the Sargasso Sea (Northwest Atlantic Ocean).   Deep Sea Research II   57:2234-2247.  

Literature-DB:  L000090     [ no PDF available ]

Bucklin, A., Lindeque, P.K., Rodriguez-Ezpeleta, N., Albaina, A., Lehtiniemi, M.   2016.   Metabarcoding of marine zooplankton: prospects, progress and pitfalls.   Journal of Plankton Research   38: 393-400.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000375    

Cepeda, G.D., Blanco-Bercial, L., Bucklin, A., Beron, C.M., Vinas, M.D.   2012.   Molecular systematic of three species of Oithona (Copepoda, Cyclopoida) from the Atlantic Ocean: Comparative analysis using 28S rDNA.   Plos ONE   7(4): e35861.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000385    

Cheng, F., Wang, M., Li, C., Sun, S.   2014.   Zooplankton community analysis int he Changjiang River estuary by single-gene-targeted metagenomics.   Chinese Journal of Oceanology and Limnology   32(4): 858-870.

Journal controls Access (goto DOI-link)       Literature-DB:  L000411    

Costa, F.O., deWaard, J.R., Boutillier, J., Ratnasinghamn, S., Dooh, R.T., Hajibabaei, M., Hebert, P.D.N.   2007.   Biological identifications through DNA barcodes: the case of the Crustacea.   Canadian Journal of Fisheries and Aquatic Sciences   64:272-295.  

Literature-DB:  L000092     [ no PDF available ]

Cunningham, C.W., Buss, L.W.   1993.   Molecular evidence for multiple episodes of pedomorphosis in the family Hydractiniidae.   Biochemical Systematics and Ecology   21: 57-69.  

Literature-DB:  L000093     [ no PDF available ]

Dawson, M.N.   2005.   Incipient speciation of Catostylus mosaicus (Scyphozoa, Rhizostomeae, Catostylidae), comparative phylogeography, and biogeography in south-eastern Australia.   Journal of Biogeography   32: 515-533.  

Literature-DB:  L000094     [ no PDF available ]

Dawson, M.N., Jacobs, D.K.   2001.   Molecular evidence for cryptic species of Aurelia aurita (Cnidaria, Scyphozoa).   Biological Bulletin   200:92-96.  

Literature-DB:  L000095     [ no PDF available ]

Dornelas, M., et-al   2017.   BioTIME: A database of biodiversity time series for the Anthropocene.   Global Ecology and Biogeography   27:760786.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000394    

Figueroa, D.F.   2011.   Phylogenetic Analysis of Ridgewayia (Copepoda: Calanoida) from the Galapagos and of a new species from the Florida Keys with a reevaluation of the phylogeny of Calanoida.   Journal of Crustacean Biology   31: 153 - 165.  

Literature-DB:  L000096     [ no PDF available ]

Folmer, O.M., Black, W., Hoen, R., Lutz, R., Vrijenhoek, R.   1994.   DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.   Molecular Marine Biology and Biotechnology   3: 294-299.  

Literature-DB:  L000097     [ no PDF available ]

Geller, J., Meyer, A., Parker, M., Hawk, H.   2013.   Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys.   Molecular Ecology Resources   13(5): 851-861.

Journal controls Access (goto DOI-link)       Literature-DB:  L000098    

Goetze, E.   2003.   Cryptic speciation on the high seas; global phylogenetics of the copepod family Eucalanidae.   Proceedings of the Royal Society of London, Series B: Biological Sciences   270:2321-2331.  

Literature-DB:  L000099     [ no PDF available ]

Goetze, E.   2011.   Population Differentiation in the Open Sea: Insights from the Pelagic Copepod Pleuromamma xiphias.   Integrative and Comparative Biology   51: 580 - 597.  

Literature-DB:  L000100     [ no PDF available ]

Goetze, E., Bradford-Grieve, J.   2005.   Genetic and morphological description of Eucalanus spinifer T. Scott, 1894 (Calanoida: Eucalanidae), a circumglobal sister pecies of the copepod E. hyalinus s.s. (Claus, 1866).   Progress in Oceanography   65: 55 - 87.  

Literature-DB:  L000101     [ no PDF available ]

Gunther, B., Knebelsberger, T., Neumann, H., Laakmann, S., Martinez Arbizu, P.   2018.   Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes.   Nature Scientific Reports   8:14822.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000386    

Hamby, R.K., Zimmer, E.A.   1988.   Ribosomal RNA sequences for inferring phylogeny within the grass family (Poaceae).   Plant Systematics and Evolution   160:29-37.  

Literature-DB:  L000102     [ no PDF available ]

Hillis, D.M., Dixon, M.T.   1991.   Ribosomal DNA: molecular evolution and phylogenetic inference.   The Quarterly Review of Biology   66:411-453.  

Literature-DB:  L000103     [ no PDF available ]

Hill, R.S., Allen, L.D., Bucklin, A.   2001.   Multiplexed species-specific PCR protocol to discriminate four N. Atlantic Calanus species, with an mtCOI gene tree for ten Calanus species.   Marine Biology   139: 279 - 287.  

Literature-DB:  L000104    

Hirai, J., Kasai, H., Nagai, S.   2017.   Cryptic zooplankton diversity revealed by a metagenatic approach to monitoring metazoan communities in the coastal waters of the Okhotsk Sea, northeastern Hokkaido.   Frontiers in Marine Science   4:379.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000393    

Hosia, A., Falkenhaug, T., Baxter, E.J., Pages, F.   2017.   Abundance, distribution and diversity of gelatinous predators along the northern Mid-Atlantic Ridge: A comparison of different sampling methodologies.   PLOS ONE   12(11):e0187491.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000388    

Kosobokova, K., Hopcroft, R.R., Hirche, H.J.   2011.   Patterns of zooplankton diveristy through the depths of the Arctic's central basins.   Marine Biodiversity   41: 29-50.

Journal controls Access (goto DOI-link)       Literature-DB:  L000412    

Kriaris, N., McLauchlan, A., Wilson, G.D.F., Livingston, S.P., Edgecombe, G.D., Macaranas, J., Cassis, G., Gray, M.R.   1998.   Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution.   Australian Journal of Zoology   46: 419-437.  

Literature-DB:  L000091     [ no PDF available ]

Laakmann, S., Gerdts, G., Erler, R., Knebelsberger, T., Martinez Arbizu, P., Raupach, M.J.   2013.   Comparison of molecular species identification for North Sea calanoid copepods (Crustacea) using proteome fingerprints and DNA sequences.   Molecular Ecology Resources   13(5): 862-876.

Journal controls Access (goto DOI-link)       Literature-DB:  L000105    

Lee, C.E.   2000.   Global phylogeography of a cryptic copepod species complex and reproductive isolation between genetically proximate 'populations'.   Evolution   54: 2014-2027.  

Literature-DB:  L000106     [ no PDF available ]

Lindeque, P.K., Parry, H.E., Harmer, R.A., Somerfield, P.J., Atkinson, A.   2013.   Next generation sequencing reveals the hidden diversity of zooplankton assemblages.   PLos ONE   8(11):e81327.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000389    

Machida, R.J., Tsuda, R.   2010.   Dissimilarity of species and forms of planktonic Neocalanus copepods using mitochondrial COI, 12S, nuclear ITS, and 28S gene sequences.   PLOS ONE   5:e10278.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000109    

Machida, R.J., Miya, M.U., Nishida, M., Nishida, S.   2002.   Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda).   Marine Biotechnology   4: 406-417.  

Literature-DB:  L000107     [ no PDF available ]

Machida, R.J., Miya, M.U., Nishida, M., Nishida, S.   2004.   Large-scale gene rearrangements in the mitochondrial genomes of two calanoid copepods Eucalanus bungii and Neocalanus cristatus (Crustacea), with notes on new versatile primers for the srRNA and COI genes.   Gene   332: 71-78.  

Literature-DB:  L000108     [ no PDF available ]

Machida, R.J., Leray, M., Ho, S-L., Knowlton, N.   2017.   Data Descriptor: Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples.   Scientific Data   4:170027.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000406    

Merrit, T.J.S., Shi, L., Chase, M.C., Rex, M.A., Etter, R.J.   1998.   Universal cytochrome b primers facilitate intraspecific studies in molluscan taxa.   Molecular Marine Biology and Biotechnology   7:7-11.  

Literature-DB:  L000110     [ no PDF available ]

Meyer, C.P.   2003.   Molecular systematics of cowries (Gastropoda: Cypraeidae) and diversification patterns in the tropics.   Biological Journal of the Linnean Society   79:401-459.  

Literature-DB:  L000111     [ no PDF available ]

Morabito, G., et-al   2018.   Plankton dynamics across the freshwater, transitional and marine research sites of the LTER-Italy nework. Patterns, flucuations, drivers.   Science of the Total Environment   627: 373-387.

Journal controls Access (goto DOI-link)       Literature-DB:  L000409    

Mumm, N.   1991.   Zur sommerlichen Verteilung des Mesozooplanktons im Nansen Basin, Nordpolarmeer.   Berichte zur Polarforschung (Reports on Polar Research)   92: 1-173.  

Literature-DB:  L000125     [ no PDF available ]

Musialik-Koszarowska, M., Dzierzbicka-Glowacka, L., Weydmann, A.   2018.   Influence of environmental factors on the population dynamics of key zooplankton species in the Gulf of Gdansk (Southern Baltic Sea).   Oceanologia   (2018).

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000390    

Noblezada, M.M., Miyamoto, H., Campos, W.L., Yusoff, F.M.D., Nishida, S.   2017.   Phylogeny of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago.   Journal of the Marine Biological Association of the United Kingdom   97(1): 129-140.

Journal controls Access (goto DOI-link)       Literature-DB:  L000410    

Ortman, B.D.   2008.   DNA Barcoding the Medusozoa and Ctenophora.   Disseration, University of Connecticut, Storrs, CT   121pp.  

Literature-DB:  L000112     [ no PDF available ]

Ortman, B.D., Bucklin, A., Pages, F., Youngbluth, M.   2010.   DNA Barcoding the Medusozoa using mtCOI.   Deep Sea Research II   57:2148-2156.  

Literature-DB:  L000113     [ no PDF available ]

Palumbi, S.R.   1996.   Nucleic acids II. The polymerase chain re- action.   In Hillis DM, Moritz C,. Mable BK (eds), Molecular Systematics, 2nd edn. Sinauer Assoc., Sunderland, MA:   205-247.  

Literature-DB:  L000114     [ no PDF available ]

Papadopoulos, L.N., Peijnenburg, K.T.C.A., Luttikhuizen, P.C.   2005.   Phylogeography of the calanoid copepods Calanus helgolandicus and C. euxinus suggests Pleistocene divergences between Atlantic, Mediterranean, and Black Sea populations.   Marine Biology   147: 1353-1365.  

Literature-DB:  L000115     [ no PDF available ]

Raupach, M.J., Mayer, C., Malyutina, M., Wegele, J-W.   2009.   Multiple origins of deep-sea Asellota (Crustacea: Isopoda) from shallow waters revealed by molecular data.   Proceedings of the Royal Society of London, Series B: Biological Sciences   276:799-808.  

Literature-DB:  L000116     [ no PDF available ]

Satapoomin, S., Collins AG, B.M.S., Haddock SHD,   2010.   Evolutionary relationships among scyphozoan jellyfish families based on complete taxon sampling and phylogenetic analyses of 18S and 28S ribosomal DNA.   Integrative and Comparative Biology   50:436-455.  

Literature-DB:  L000084     [ no PDF available ]

Schroth, W., Jarms, G., Streit, B., Schierwater, B.   2002.   Speciation and phylogeography in the cosmopolitan marine moon jelly, Aurelia sp.   BMC Evolutionary Biology   2:1-10.  

Literature-DB:  L000117     [ no PDF available ]

Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H., Flook, P.   1994.   Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved PCR primers.   Annals of the Entomological Society of America   87:651-701.  

Literature-DB:  L000118     [ no PDF available ]

Sommer, S.A., Van Woudenberg, L., Lenz, P.H., Cepeda, G.D., Goetze, E.   2017.   Vertical gradients in species richness and community composition across the twilight zone in the North Pacific Subtropical Gyre.   Molecular Ecology   2017: 1-21.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000391    

Spears, T., Abele, L.G., Kim, W.   1992.   The monophyly of brachyuran crabs: a phylogenetic study based on 18S rRNA.   Systematic Biology   41: 446-461.  

Literature-DB:  L000119     [ no PDF available ]

Thum, R.A.   2004.   Using 18S rDNA to resolve diaptomid copepod (Copepoda: Calanoida: Diaptomidae) phylogeny: an example with the North American genera.   Hydrobiologia   519, 135-141.  

Literature-DB:  L000120     [ no PDF available ]

Thum, R.A., Harrison, R.G.   2009.   Deep genetic divergences among morphologically similar and parapatric Skistodiaptomus (Copepoda: Calanoida: Diaptomidae) challenge the hypothesis of Pleistocene speciation.   Biological Journal of the Linnean Society   96, 150-165.  

Literature-DB:  L000121     [ no PDF available ]

Verheye, H.M., Lamont, T., Huggett, J., Kreiner, A., Hampton, I.   2016.   Plankton productivity of the Benguela Current Large Marine Ecosystem (BCLME).   Environmental Development   17: 75-92.

Journal controls Access (goto DOI-link)       Literature-DB:  L000408    

Wall-Palmer, D., Peijnenburg, K.T.C.A., et-al   2018.   Biogeography and genetic diversity of the atlantid heterpods.   Progress in Oceanography   160(2018): 1-25.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000392    

Ward, R.D., Zemlak, T.S., Innes, B.H., Last, P.R., Hebert, P.D.N.   2005.   DNA Barcoding of Australia's fish species.   Philosophical Transactions of the Royal Society B: Biological Sciences   360:1847-1857.  

Literature-DB:  L000122     [ no PDF available ]

Weydmann, A., et-al   2017.   Mitochondrial genomes of the key zooplankton copepods Arctic Calanus glacialis and North Atlantic Calanus finmarchicus with the longest crustacean non-coding regions.   Scientific Reports   7: 13702.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000436    

White, T.J., Bruns, T., Lee, S., Taylor, J.   1990.   Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics.   In Innis MA, Gelfand DH, Sninsky JJ (Eds), PCR Protocols. Academic Press, New York   pp 315-322.  

Literature-DB:  L000123     [ no PDF available ]

Willemse, S.   2018.   Genetic barcoding of marine zooplankton communities in the North Sea using the Minion Sequencer.   Ghent University Masters Thesis   64 pp.  

Literature-DB:  L000431    

Yang, J., et-al   2017.   Indigenous species barcode database improves the identification of zooplankton.   PLOS ONE   12(10: e0185697.

OPEN ACCESS   [   PDF   |   via DOI-link  ]       Literature-DB:  L000429    

Zardoya, R., Costas, E., Lopez-Rodas, V., Garrido-Pertierra, A., Bautista, J.M.   1995.   Revised dinoflagellate phylogeny inferred from molecular analysis of large-subunit ribosomal RNA gene sequences.   Journal of Molecular Evolution   41:637-645.  

Literature-DB:  L000124     [ no PDF available ]