Below is a listing of molecular-related references currently in the LITERATUREdb.
|
Aarbakke, O.N.S., Weydmann, A., et-al 2017.
Relative summer abundances and distribution of Pseudocalanus spp. (Copepoda: Calanoida) adults in relation to environmental variables in the Nordic Seas and Svalbard fjords.
|
|
Aylagas, E., Borja, A., Irigoien, X., Rodriguez-Ezpeleta, N. 2016.
Benchmarking DNA Metabarcoding for Biodiversity-based Monitoring and Assessment.
|
|
Aylagas, E., Borja, A., Muxika, I., Rodriguez-Ezpeleta, N. 2018.
Adapting metabarcoding-based benthic biomonitoring into routine marine ecological status assessment networks.
|
|
Baek, S.Y., et-al 2016.
DNA barcoding of metazoan zooplankton copepods from South Korea.
|
|
Blanco-Bercial, L. 2020.
Metabarcoding analyses and seasonality of the zooplankton community at BATS.
|
|
Blanco-Bercial, L., Alvarez-Marques, F. 2007.
RFLP procedure to discriminate betwee Clausocalanus Giesbrecht, 1888 (Copepoda, Calanoida) species in the Central Cantabrian Sea.
Journal of Experimental Marine Biology and Ecology |
|
Blanco-Bercial, L., Cornils, A., Copley, N.J., Bucklin, A. 2014.
DNA barcoding of marine copepods: Assessent of analytical approaches to species identification.
|
|
Braga, E., Zardoya, R., Meyer, A., Yen, J. 1999.
Mitochondrial and nuclear rRNA based copepod phylogeny with emphasis on the Euchaetidae (Calanoida).
|
|
Brylinski, J-M., Li, L-L., Vansteenbruge, L., Antajan, E., Hoffman, S., Van Ginderdeuren, K., Vincent, D. 2016.
Did the Indo-Pacific leptopmedusa Lovenella assimilis (Browne, 1905) or Eucheilota menoni Kram, 1959 invade northern European marine waters? Morphological and genetic approaches.
|
|
Bucklin, A., Caudill, C.C., Bentley, A.M. 1998.
Population genetics and phylogeny of marine planktonic copepods.
In Cooksey KC (ed.), Molecular Approaches to the Study of the Ocean. Chapman Hall, London: |
|
Bucklin, A., Frost, B.W., Bradford-Grieve, J., Allen, P.J., Copley, N.J. 2003.
Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae.
|
|
Bucklin, A., Hopcroft, R.R., Kosobokova, K., Nigro, L.M., Ortman, B.D., Jennings, R.M., Sweetman, C.J. 2010.
DNA barcoding of Arctic Ocean holozooplankton for species identification and recognition.
|
|
Bucklin, A., Ortman, B.D., Jennings, R.M., Nigro, L.M., Sweetman, C.J., Copley, N.J., Sutton, T., Wiebe, P.H. 2010.
A Rosetta Stone for metazoan zooplankton: DNA barcode analysis of species diversity in the Sargasso Sea (Northwest Atlantic Ocean).
|
|
Bucklin, A., Lindeque, P.K., Rodriguez-Ezpeleta, N., Albaina, A., Lehtiniemi, M. 2016.
Metabarcoding of marine zooplankton: prospects, progress and pitfalls.
|
|
Bucklin, A., Yeh, H.D., Questel, J.M., Richardson, D.E., Reese, B., Copley, N.J., Wiebe, P.H. 2019.
Time-series metabarcoding analysis of zooplankton diversity of the NW Atlantic continental shelf.
ICES Journal of Marine Science |
|
Bucklin, A., Peijnenburg, K.T.C.A., Kosobokova, K., O'Brien, T.D., Blanco-Bercial, L., Cornils, A., Falkenhaug, T., Hopcroft, R.R., Hosia, A., Laakmann, S., Li, C., Martell, L., Questel, J.M., Wall-Palmer, D., Wang, M., Wiebe, P.H., Weydmann, A. 2021.
Toward a global reference database of COI barcodes for marine zooplankton.
|
|
Bucklin, A., Questel, J.M., Blanco-Bercial, L., Frenzel, A., Smolenack, S.B., Wiebe, P.H. 2021.
Population connectivity of the euphausiid, Stylocheiron elongatum, in the Gulf Stream (NW Atlantic Ocean) in relation to COI barcode diversity of Stylocheiron species.
|
|
Bucklin, A., Peijnenburg, K.T.C.A., Kosobokova, K., Machida, R.J. 2021.
New insights into biodiversity, biogeography, ecology, and evolution of marine zooplankton based on molecular approaches. Introduction to the Themed Set.
|
|
Bucklin, A., Batta-Lona, P., Questel, J.M., Wiebe, P.H., Richardson, D.E., Copley, N.J., O'Brien, T.D. 2022.
COI Metabarcoding of Zooplankton Species Diversity for Time-Series Monitoring of the NW Atlantic Continental Shelf.
Frontiers in Marine Science - Marine Ecosystem Ecology |
|
Burridge, A.K., Van der Hulst, R., Goetze, E., Peijnenburg, K.T.C.A. 2019.
Assessing species boundaries in the open sea: an integrative taxonomic approach to the pteropod genus Diacavolinia.
Zoological Journal of the Linnean Society |
|
Castellani, C., Edwards, M. 2016.
Marine Plankton: A Practical Guide to Ecology, Methodology, and Taxonomy.
|
|
Cepeda, G.D., Blanco-Bercial, L., Bucklin, A., Beron, C.M., Vinas, M.D. 2012.
Molecular systematic of three species of Oithona (Copepoda, Cyclopoida) from the Atlantic Ocean: Comparative analysis using 28S rDNA.
|
|
Cheng, F., Wang, M., Li, C., Sun, S. 2014.
Zooplankton community analysis int he Changjiang River estuary by single-gene-targeted metagenomics.
Chinese Journal of Oceanology and Limnology |
|
Cornils, A., et-al 2017.
Global phylogeography of Oithona similis s.l. (Crustacea, Copepoda, Oithonidae) A cosmopolitan plankton species or a complex of cryptic lineages?.
Molecular Phylogenetics and Evolution |
|
Costa, F.O., deWaard, J.R., Boutillier, J., Ratnasinghamn, S., Dooh, R.T., Hajibabaei, M., Hebert, P.D.N. 2007.
Biological identifications through DNA barcodes: the case of the Crustacea.
Canadian Journal of Fisheries and Aquatic Sciences |
|
Cunningham, C.W., Buss, L.W. 1993.
Molecular evidence for multiple episodes of pedomorphosis in the family Hydractiniidae.
Biochemical Systematics and Ecology |
|
Dawson, M.N. 2005.
Incipient speciation of Catostylus mosaicus (Scyphozoa, Rhizostomeae, Catostylidae), comparative phylogeography, and biogeography in south-eastern Australia.
|
|
Dawson, M.N., Jacobs, D.K. 2001.
Molecular evidence for cryptic species of Aurelia aurita (Cnidaria, Scyphozoa).
|
|
Deagle, B.E., et-al 2015.
Antarctic krill population genomics: apparent panmixia, but genome complexity and large population size muddy the water.
|
|
DeHart, H.M., Blanco-Bercial, L., Passacantando, M., Questel, J.M., Bucklin, A. 2020.
Pathways of Pelagic Connectivity: Eukrohnia hamata (Chaetognatha) in the Arctic Ocean.
|
|
deWaard, J.R., et-al 2019.
A reference library for Canadian invertebrates with 1.5 million barcodes, voucher specimens, and DNA samples.
|
|
Di Capua, I., Mazzocchi, M.G., et-al 2017.
Molecular phylogeny of oncaeidae (copepoda) using nuclear ribosomal internal transcribed spacer (ITS rDNA).
|
|
Di Capua, I., Piredda, R., Mazzocchi, M.G., Zingone, A. 2021.
Metazoan diversity and seasonality through eDNA metabarcoding at a Mediterranean long term ecological research site.
|
|
Di Capua, I., D'Angiolo, R., Piredda, R., Minucci, C., Boero, F., Uttieri, M., Carotenuto, Y. 2022.
From Phenotypes to Genotypes and Back: Toward an Integrated Evaluation of Biodiversity in Calanoid Copepods.
|
|
Dornelas, M., et-al 2017.
BioTIME: A database of biodiversity time series for the Anthropocene.
Global Ecology and Biogeography |
|
Figueroa, D.F. 2011.
Phylogenetic Analysis of Ridgewayia (Copepoda: Calanoida) from the Galapagos and of a new species from the Florida Keys with a reevaluation of the phylogeny of Calanoida.
|
|
Folmer, O.M., Black, W., Hoen, R., Lutz, R., Vrijenhoek, R. 1994.
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
Molecular Marine Biology and Biotechnology |
|
Geller, J., Meyer, A., Parker, M., Hawk, H. 2013.
Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys.
|
|
Goetze, E. 2003.
Cryptic speciation on the high seas; global phylogenetics of the copepod family Eucalanidae.
Proceedings of the Royal Society of London, Series B: Biological Sciences |
|
Goetze, E. 2011.
Population Differentiation in the Open Sea: Insights from the Pelagic Copepod Pleuromamma xiphias.
Integrative and Comparative Biology |
|
Goetze, E., Bradford-Grieve, J. 2005.
Genetic and morphological description of Eucalanus spinifer T. Scott, 1894 (Calanoida: Eucalanidae), a circumglobal sister pecies of the copepod E. hyalinus s.s. (Claus, 1866).
|
|
Gunther, B., Knebelsberger, T., Neumann, H., Laakmann, S., Martinez Arbizu, P. 2018.
Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes.
|
|
Hamby, R.K., Zimmer, E.A. 1988.
Ribosomal RNA sequences for inferring phylogeny within the grass family (Poaceae).
Plant Systematics and Evolution |
|
Hillis, D.M., Dixon, M.T. 1991.
Ribosomal DNA: molecular evolution and phylogenetic inference.
The Quarterly Review of Biology |
|
Hill, R.S., Allen, L.D., Bucklin, A. 2001.
Multiplexed species-specific PCR protocol to discriminate four N. Atlantic Calanus species, with an mtCOI gene tree for ten Calanus species.
|
|
Hirai, J., Kasai, H., Nagai, S. 2017.
Cryptic zooplankton diversity revealed by a metagenatic approach to monitoring metazoan communities in the coastal waters of the Okhotsk Sea, northeastern Hokkaido.
|
|
Hirai, J., Tachibana, A., Tsuda, A. 2020.
Large-scale metabarcoding analysis of epipelagic and mesopelagic copepods in the Pacific.
|
|
Hirai, J., et-al 2021.
DNA/RNA metabarcoding and morphological analysis of epipelagic copepod communities in the Izu Ridge off the southern coast of Japan.
|
|
Hosia, A., Falkenhaug, T., Baxter, E.J., Pages, F. 2017.
Abundance, distribution and diversity of gelatinous predators along the northern Mid-Atlantic Ridge: A comparison of different sampling methodologies.
|
|
Huggett, J., et-al 2022.
Metabarcoding of zooplankton to derive indicators of pelagic ecosystem status.
South African Journal of Science |
|
Kaiser, P., Cornils, A., Laakmann, S., et-al 2018.
High-resolution community analysis of deep-sea copepods using MALDI-TOF protein fingerprinting.
Deep Sea Research Part I: Oceanographic Research Papers |
|
Kasapidis, P., Mazzocchi, M.G., Fernandez_de_Puelles, M.L., Di Capua, I., Frangoulis, C., et-al 2018.
Revising the taxonomic status and distribution of the Paracalanus parvus species complex (Copepoda, Calanoida) in the Mediterranean and Black Seas through an integrated analysis of morphology and molecular taxonomy.
|
|
Kase, L., Metfies, K., Kraberg, A.C., et-al 2021.
Metabarcoding analysis suggests that flexible food web interactions in the eukaryotic plankton community are more common than specific predator-prey relationships at Helgoland Roads, North Sea.
|
|
Kolbasova, G., Kosobokova, K., Neretina, T. 2020.
Bathy- and mesopelagic annelida from the Arctic Ocean: Description of new, redescriptoin of known and notes on some "cosmopolitan" species.
|
|
Kosobokova, K., Hopcroft, R.R., Hirche, H.J. 2011.
Patterns of zooplankton diveristy through the depths of the Arctic's central basins.
|
|
Kriaris, N., McLauchlan, A., Wilson, G.D.F., Livingston, S.P., Edgecombe, G.D., Macaranas, J., Cassis, G., Gray, M.R. 1998.
Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution.
|
|
Laakmann, S., Gerdts, G., Erler, R., Knebelsberger, T., Martinez Arbizu, P., Raupach, M.J. 2013.
Comparison of molecular species identification for North Sea calanoid copepods (Crustacea) using proteome fingerprints and DNA sequences.
|
|
Laakmann, S., Renz, J., et-al 2019.
Do molecular phylogenies unravel the relationships among the evolutionary young “Bradfordian” families (Copepoda; Calanoida)?
Molecular Phylogenetics and Evolution |
|
Laakmann, S., Blanco-Bercial, L., Cornils, A. 2020.
The crossover from microscopy to genes in marine diversity - from species to assemblages in marine pelagic copepods.
|
|
Laroche, O., Kersten, O., Smith, C.R., Goetze, E. 2020.
Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone.
|
|
Lee, C.E. 2000.
Global phylogeography of a cryptic copepod species complex and reproductive isolation between genetically proximate 'populations'.
|
|
Lindeque, P.K., Parry, H.E., Harmer, R.A., Somerfield, P.J., Atkinson, A. 2013.
Next generation sequencing reveals the hidden diversity of zooplankton assemblages.
|
|
Machida, R.J., Tsuda, R. 2010.
Dissimilarity of species and forms of planktonic Neocalanus copepods using mitochondrial COI, 12S, nuclear ITS, and 28S gene sequences.
|
|
Machida, R.J., Miya, M.U., Nishida, M., Nishida, S. 2002.
Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda).
|
|
Machida, R.J., Miya, M.U., Nishida, M., Nishida, S. 2004.
Large-scale gene rearrangements in the mitochondrial genomes of two calanoid copepods Eucalanus bungii and Neocalanus cristatus (Crustacea), with notes on new versatile primers for the srRNA and COI genes.
|
|
Machida, R.J., Leray, M., Ho, S-L., Knowlton, N. 2017.
Data Descriptor: Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples.
|
|
Machida, R.J., et-al 2021.
Bias in the taxonomic methods used to estimate the zooplankton diversity.
|
|
Matthews, S.A., Goetze, E., Ohman, M.D. 2021.
Recommendations for interpreting zooplankton metabarcoding observations and integrating molecular methods with morphological analyses.
|
|
Merrit, T.J.S., Shi, L., Chase, M.C., Rex, M.A., Etter, R.J. 1998.
Universal cytochrome b primers facilitate intraspecific studies in molluscan taxa.
Molecular Marine Biology and Biotechnology |
|
Meyer, C.P. 2003.
Molecular systematics of cowries (Gastropoda: Cypraeidae) and diversification patterns in the tropics.
Biological Journal of the Linnean Society |
|
Morabito, G., et-al 2018.
Plankton dynamics across the freshwater, transitional and marine research sites of the LTER-Italy nework. Patterns, flucuations, drivers.
Science of the Total Environment |
|
Mumm, N. 1991.
Zur sommerlichen Verteilung des Mesozooplanktons im Nansen Basin, Nordpolarmeer.
Berichte zur Polarforschung (Reports on Polar Research) |
|
Musialik-Koszarowska, M., Dzierzbicka-Glowacka, L., Weydmann, A. 2018.
Influence of environmental factors on the population dynamics of key zooplankton species in the Gulf of Gdansk (Southern Baltic Sea).
|
|
Noblezada, M.M., Miyamoto, H., Campos, W.L., Yusoff, F.M.D., Nishida, S. 2017.
Phylogeny of the planktonic shrimp Lucifer hanseni Nobili 1905 in the Indo-Malayan Archipelago.
Journal of the Marine Biological Association of the United Kingdom |
|
Ortman, B.D. 2008.
DNA Barcoding the Medusozoa and Ctenophora.
Disseration, University of Connecticut, Storrs, CT |
|
Ortman, B.D., Bucklin, A., Pages, F., Youngbluth, M. 2010.
DNA Barcoding the Medusozoa using mtCOI.
|
|
Palumbi, S.R. 1996.
Nucleic acids II. The polymerase chain re- action.
In Hillis DM, Moritz C,. Mable BK (eds), Molecular Systematics, 2nd edn. Sinauer Assoc., Sunderland, MA: |
|
Papadopoulos, L.N., Peijnenburg, K.T.C.A., Luttikhuizen, P.C. 2005.
Phylogeography of the calanoid copepods Calanus helgolandicus and C. euxinus suggests Pleistocene divergences between Atlantic, Mediterranean, and Black Sea populations.
|
|
Pappalardo, P., Collins AG, A.G., et-al 2021.
The role of taxonomic expertise in interpretation of metabarcoding studies.
|
|
Parry, H.E., Atkinson, A., Somerfield, P.J., Lindeque, P.K. 2020.
A metabarcoding comparison of taxonomic richness and composition between the water column and the benthic boundary layer.
ICES Journal of Marine Science |
|
Parry, H.E., Atkinson, A., Somerfield, P.J., Lindeque, P.K. 2021.
What does conventional plankton monitoring miss? A metabarcoding comparison of taxonomic richness, composition and density between the water column and the benthic boundary layer.
|
|
Peijnenburg, K.T.C.A., Janssen, A.W., Wall-Palmer, D., Goetze, E., Maas, A.E., Todd, J.A., Marletaz, F. 2020.
The origin and diversification of pteropods precede past pertubations int he Earth's carbon cycle.
|
|
Peralba, A., Mazzocchi, M.G., Harrison, R.G. 2017.
Niche separation and reproduction of Clausocalanus species (Copepoda, Calanoida) in the Atlantic Ocean.
|
|
Questel, J.M., Blanco-Bercial, L., Hopcroft, R.R. 2016.
Phylogeography and connectivity of the Pseudocalanus (Copepoda: Calanoida) species complex in the eastern North Pacific and the Pacific Arctic Region.
|
|
Questel, J.M., Hopcroft, R.R., DeHart, H.M., Smoot, C.A., Kosobokova, K., Bucklin, A. 2021.
Metabarcoding of zooplankton diversity within the Chukchi Borderlands, Arctic Ocean: Improved resolution from multi-gene markers and region-specific DNA databases.
|
|
Rahlff, J., Renz, J., et-al 2018.
Blue pigmentation of neustonic copepods benefits exploitation of a prey-rich niche at the air-sea boundary.
|
|
Raupach, M.J., Mayer, C., Malyutina, M., Wegele, J-W. 2009.
Multiple origins of deep-sea Asellota (Crustacea: Isopoda) from shallow waters revealed by molecular data.
Proceedings of the Royal Society of London, Series B: Biological Sciences |
|
Renz, J., Laakmann, S. 2018.
The phylogeny of Ryocalanoidea (Copepoda, Calanoida) based on morphology and a multi-gene analysis with a description of new ryocalanoidean species.
Zoological Journal of the Linnean Society |
|
Satapoomin, S., Collins AG, A.G., Haddock SHD, 2010.
Evolutionary relationships among scyphozoan jellyfish families based on complete taxon sampling and phylogenetic analyses of 18S and 28S ribosomal DNA.
Integrative and Comparative Biology |
|
Schroth, W., Jarms, G., Streit, B., Schierwater, B. 2002.
Speciation and phylogeography in the cosmopolitan marine moon jelly, Aurelia sp.
|
|
Shiozaki, T., et-al 2021.
A DNA metabarcoding approach for recovering plankton communities from archived samples fixed in formalin.
|
|
Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H., Flook, P. 1994.
Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved PCR primers.
Annals of the Entomological Society of America |
|
Sommer, S.A., Van Woudenberg, L., Lenz, P.H., Cepeda, G.D., Goetze, E. 2017.
Vertical gradients in species richness and community composition across the twilight zone in the North Pacific Subtropical Gyre.
|
|
Spears, T., Abele, L.G., Kim, W. 1992.
The monophyly of brachyuran crabs: a phylogenetic study based on 18S rRNA.
|
|
Stern, R., Bresnan, E., et-al 2018.
Molecular analyses of protists in long-term observation programmescurrent status and future perspectives.
|
|
Thum, R.A. 2004.
Using 18S rDNA to resolve diaptomid copepod (Copepoda: Calanoida: Diaptomidae) phylogeny: an example with the North American genera.
|
|
Thum, R.A., Harrison, R.G. 2009.
Deep genetic divergences among morphologically similar and parapatric Skistodiaptomus (Copepoda: Calanoida: Diaptomidae) challenge the hypothesis of Pleistocene speciation.
Biological Journal of the Linnean Society |
|
Verheye, H.M., Lamont, T., Huggett, J., Kreiner, A., Hampton, I. 2016.
Plankton productivity of the Benguela Current Large Marine Ecosystem (BCLME).
|
|
Walczynska, K.S., Soreide, J.E., et-al 2019.
DNA barcoding of Cirripedia larvae reveals new knowledge on their biology in Arctic coastal ecosystems.
|
|
Walczynska, K.S., Weydmann, A., et-al 2019.
DNA barcoding of cirripedia larvae reveals new knowledge on their biology in arctic coastal ecosystems.
|
|
Wall-Palmer, D., Peijnenburg, K.T.C.A., et-al 2018.
Biogeography and genetic diversity of the atlantid heterpods.
|
|
Wall-Palmer, D., Janssen, A.W., Goetze, E., Choo, LQ, Mekkes, L, Peijnenburg, K.T.C.A. 2020.
Fossil-calibrated molecular phylogeny of atlantid heteropods (Gastropoda, Pterotracheoidea).
|
|
Ward, R.D., Zemlak, T.S., Innes, B.H., Last, P.R., Hebert, P.D.N. 2005.
DNA Barcoding of Australia's fish species.
Philosophical Transactions of the Royal Society B: Biological Sciences |
|
Weydmann, A., et-al 2016.
Pan-Arctic population of the keystone copepod Calanus glacialis.
|
|
Weydmann, A., et-al 2017.
Mitochondrial genomes of the key zooplankton copepods Arctic Calanus glacialis and North Atlantic Calanus finmarchicus with the longest crustacean non-coding regions.
|
|
Weydmann, A., et-al 2017.
Postglacial expansion of the Arctic keystone copepod Calanus glacialis.
|
|
White, T.J., Bruns, T., Lee, S., Taylor, J. 1990.
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics.
In Innis MA, Gelfand DH, Sninsky JJ (Eds), PCR Protocols. Academic Press, New York |
|
Willemse, S. 2018.
Genetic barcoding of marine zooplankton communities in the North Sea using the Minion Sequencer.
Ghent University Masters Thesis |
|
Yang, J., et-al 2017.
Indigenous species barcode database improves the identification of zooplankton.
|
|
Yebra, L., et-al 2019.
Molecular identification of the diet of Sardina pilchardus larvae in the SW Mediterranean Sea.
|
|
Yeh, H.D., Questel, J.M., Maas, K.R., Bucklin, A. 2020.
Metabarcoding analysis of prey and microbiota composition of the copepod Calanus finmarchicus in the North Atlantic Ocean.
|
|
Zardoya, R., Costas, E., Lopez-Rodas, V., Garrido-Pertierra, A., Bautista, J.M. 1995.
Revised dinoflagellate phylogeny inferred from molecular analysis of large-subunit ribosomal RNA gene sequences.
Journal of Molecular Evolution |
PDF