Molecular/Barcoding Data

This page is an in-development cooperative work with SCOR WG157 (MetaZooGene, MetaZooGene.org).   The "MZG" plots and information tables below summarize known observations of this taxa (Aurelia) and locations associated with GenBank barcodes for this taxa or taxa group (red stars).   Additional information on this taxa is available at  https://copepedia.org/?id=T4002106



In the map above, light blue circles indicate where this taxa has been observed in COPEPOD or OBIS.
Red stars indicate locations where genus-level or species-level barcoding samples exist in GenBank or BOLD.




The table below shows the values plotted in the bargraph above.

Sibling-taxa of this
Genus
# of Species
Observed in
COPEPOD/OBIS
# of Species
barcoded in
GenBank/BOLD
# of these
barcoded-species
with GeoLocation
Aurelia aurita111
Aurelia coerulea110
Aurelia labiata111
Aurelia limbata110
Aurelia relicta110
Aurelia solida110
GRAND TOTAL662




The table below provides species-level obs-and-barcode-counts information sorted by taxonomic hierarchy.
Not all barcodes have geo-location, and repeating same-location/duplicate-location barcodes visibly may show up as a single star on the map.

Species and Taxonomic-Rankings# unique obs
in COPEPOD
# of
Barcodes
# of Barcodes
with GeoLoc
~ # of
BC-Stars
Cnidaria : Scyphozoa : Semaeostomeae : Ulmaridae : Aurelia : Aurelia aurita
27262349513
Cnidaria : Scyphozoa : Semaeostomeae : Ulmaridae : Aurelia : Aurelia coerulea
02700
Cnidaria : Scyphozoa : Semaeostomeae : Ulmaridae : Aurelia : Aurelia dubia
(no barcodes)
0000
Cnidaria : Scyphozoa : Semaeostomeae : Ulmaridae : Aurelia : Aurelia flavidula
(no barcodes)
0000
Cnidaria : Scyphozoa : Semaeostomeae : Ulmaridae : Aurelia : Aurelia labiata
181100
Cnidaria : Scyphozoa : Semaeostomeae : Ulmaridae : Aurelia : Aurelia limbata
15100
Cnidaria : Scyphozoa : Semaeostomeae : Ulmaridae : Aurelia : Aurelia relicta
01100
Cnidaria : Scyphozoa : Semaeostomeae : Ulmaridae : Aurelia : Aurelia solida
72300
Cnidaria : Scyphozoa : Semaeostomeae : Ulmaridae : Aurelia : Medusa aurita
(no barcodes)
0000









The Primer data below are a collaborative contribution of the ICES Working Group on Integrated Morphologocial and Molecular Taxonomy (WGIMT).

You can also download a CSV version of this compilation file (click here).

Self PRIMERS:   Below are primers available for the current taxa entity (Aurelia).

Taxonomic Entity Marker Primer Name Direction Sequence ( 5' - 3' ) Reference Primer Pairings Annealing T Compilation
Cnidaria : Scyphozoa : Aurelia spp. (T4002106) Mitochondrial COI H5 CATAATTCAACATCGAGG Schroth et al. 2002 (L000117) ... L5 WGIMT-compilation 2016
Cnidaria : Scyphozoa : Aurelia spp. (T4002106) Mitochondrial COI L5 CTCTTGTAAGGTGAAGCC Schroth et al. 2002 (L000117) ... H5 WGIMT-compilation 2016

Last Updated:   2020-May-10