Molecular/Barcoding Data

This page is an in-development cooperative work with SCOR WG157 (MetaZooGene, MetaZooGene.org).   The "MZG" plots and information tables below summarize known observations of this taxa (Diaptomidae) and locations associated with GenBank barcodes for this taxa or taxa group (red stars).   Additional information on this taxa is available at  https://copepedia.org/?id=T4001908

Map Views:   [   World   |   Arctic   |   NATL   |   NPAC   |   SPAC   |   Indian Ocean   ]



In the map above, light blue circles indicate where this taxa has been observed in COPEPOD or OBIS.
Red stars indicate locations where genus-level or species-level barcoding samples exist in GenBank or BOLD.




The table below shows the values plotted in the bargraph above.   Ocean columns indicate taxa has been observed in that ocean.

Sibling-taxa of this
Family
# of Species
Observed in
COPEPOD/OBIS
# of Species
barcoded in
GenBank/BOLD
# of these
barcoded-species
with GeoLocation
Acanthodiaptomus221
Aglaodiaptomus110
Allodiaptomus110
Arctodiaptomus442
Diaptomus330
Eodiaptomus332
Eudiaptomus441
Filipinodiaptomus220
Heliodiaptomus444
Hemidiaptomus220
Hesperodiaptomus111
Leptodiaptomus555
Mastigodiaptomus888
Metadiaptomus220
Mixodiaptomus111
Mongolodiaptomus110
Neodiaptomus221
Neutrodiaptomus330
Nordodiaptomus111
Notodiaptomus100
Phyllodiaptomus111
Prionodiaptomus111
Sinodiaptomus221
Skistodiaptomus662
Tropodiaptomus111
GRAND TOTAL626133







The Primer data below are a collaborative contribution of the ICES Working Group on Integrated Morphologocial and Molecular Taxonomy (WGIMT).

You can also download a CSV version of this compilation file (click here).

Self PRIMERS:   Below are primers available for the current taxa entity (Diaptomidae).

Taxonomic Entity Marker Primer Name Direction Sequence ( 5' - 3' ) Reference Primer Pairings Annealing T Compilation
Crustacea : Copepoda : Diaptomidae (T4001908) Nuclear 18S 18S-1F Forward AACCTGGTTGATCCTGCCAGT Thum 2004 (L000120) ... 18S-1R WGIMT-compilation 2016
Crustacea : Copepoda : Diaptomidae (T4001908) Nuclear 18S 18S-1R Reverse TGGTGCCCTTCCGTCAATTCCT Thum 2004 (L000120) ... 18S-1F WGIMT-compilation 2016
Crustacea : Copepoda : Diaptomidae (T4001908) Nuclear 18S 18S-2F Forward CTGGTGCCAGCAGCCGCGG Thum 2004 (L000120) ... 18S-2R WGIMT-compilation 2016
Crustacea : Copepoda : Diaptomidae (T4001908) Nuclear 18S 18S-2R Reverse TTGATCCTTCTGCAGGTTCACCTAC Thum 2004 (L000120) ... 18S-2F WGIMT-compilation 2016

Last Updated:   2020-Nov-13