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Salmoniformes of the US-NE-LME

There are 8 species of Salmoniformes that are commonly found in the US-NE-LME.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A		 All available COI barcodes for this taxa group (collected from any ocean or without geo-referencing):
  • Of the 8 total species, only 8 species (100%) have COI barcodes (from this or any ocean).
  • There are a total of 1447 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
    • MODE
    B    		 Regional COI barcodes for this taxa group (includes only those collected in the US-NE-LME region):
  • Of the 8 total species, only 1 species (12%) have US-NE-LME-collected COI barcodes.
  • There are a total of 5 "US-NE-LME-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
    • Uncoded
    Species    		 Of the 8 total species in this region, 0 species do not have any COI barcodes (from any region).

     Barcoding progress summary for the US-NE-LME region, out of a total of 8 possible species:
    • There are COI barcodes for 8 species ( 100% coverage ). Only 1 species have barcodes sampled inside this region ( 12% coverage ).
      •
    • There are 12S barcodes for 7 species ( 87% coverage ). Only 0 species have barcodes sampled inside this region ( 0% ). 
    • There are 16S barcodes for 7 species ( 87% coverage ). Only 0 species have barcodes sampled inside this region ( 0% ).
    • There are 18S barcodes for 7 species ( 87% coverage ). Only 0 species have barcodes sampled inside this region ( 0% ).
    • There are 28S barcodes for 1 species ( 12% coverage ). Only 0 species have barcodes sampled inside this region ( 0% ).

    click on map above to see a larger version

    MZGdb Data Download Options
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    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    Table Viewing Options   [ Species-only Summary, sorted by name (default) ]   or   [ Full Taxonomic Hierarchy ]   or   [ flat-text file of sorted species names ]

    Quality Control:   I have removed 1 WoRMS-identified "non-marine" species,
        which are not included in the Total Species count above.       [ Show me a list of removed brackish species ]

    Salmoniformes of the US-NE-LME
    Taxa Name

    		Taxa
    Level    		Barcode
    Data?    		Number of
    Barcodes
    from
    any ocean    		Number of
    Barcodes
    from this region    		Barcode Locations and
    Species Occurence Map    		MZGdb Atlas
    v2.01

    2022-Mar-10
    Salmoniformes Order cummulative
    sub-totals
    ------->
    for this
    Order    		 Total Species:   10
    Sp. w/COI-Barcodes:  10

    Total COI-Barcodes:   1990    		 Total Species:   10
    Sp. w/COI-Barcodes:  3

    Total COI-Barcodes:   5    		 accepted
    T5001185

    R:1:1:1:0
    ⋄   Salmonidae Family cummulative
    sub-totals
    ------->
    for this
    Family    		 Total Species:   10
    Sp. w/COI-Barcodes:  10

    Total COI-Barcodes:   1990    		 Total Species:   10
    Sp. w/COI-Barcodes:  3

    Total COI-Barcodes:   5    		 accepted
    T5005920

    R:1:1:1:0
    ⋄   ⋄   Coregoninae Subfamily cummulative
    sub-totals
    ------->
    for this
    Subfamily    		 Total Species:   2
    Sp. w/COI-Barcodes:  2

    Total COI-Barcodes:   273    		 Total Species:   2
    Sp. w/COI-Barcodes:  0

    Total COI-Barcodes:   0    		 accepted
    T5006110

    R:1:1:1:0
    ⋄   ⋄   ⋄   Coregonus Genus cummulative
    sub-totals
    ------->
    for this
    Genus    		 Total Species:   2
    Sp. w/COI-Barcodes:  2

    Total COI-Barcodes:   273    		 Total Species:   2
    Sp. w/COI-Barcodes:  0

    Total COI-Barcodes:   0    		 accepted
    T5006237

    R:1:1:1:0
    ⋄   ⋄   ⋄   ⋄   Coregonus huntsmani Species
    (1)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 2
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 accepted
    T5008639

    R:1:1:1:0
    ⋄   ⋄   Salmoninae Subfamily cummulative
    sub-totals
    ------->
    for this
    Subfamily    		 Total Species:   8
    Sp. w/COI-Barcodes:  8

    Total COI-Barcodes:   1717    		 Total Species:   8
    Sp. w/COI-Barcodes:  3

    Total COI-Barcodes:   5    		 accepted
    T5006093

    R:1:1:1:0
    ⋄   ⋄   ⋄   Oncorhynchus Genus cummulative
    sub-totals
    ------->
    for this
    Genus    		 Total Species:   3
    Sp. w/COI-Barcodes:  3

    Total COI-Barcodes:   896    		 Total Species:   3
    Sp. w/COI-Barcodes:  2

    Total COI-Barcodes:   4    		 accepted
    T5006238

    R:1:1:1:0
    ⋄   ⋄   ⋄   ⋄   Oncorhynchus kisutch Species
    (2)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 233
      12S = 7
      16S = 68
      18S = 3
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 accepted
    T5010896

    R:1:1:1:0
    ⋄   ⋄   ⋄   ⋄   Oncorhynchus mykiss Species
    (3)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 397
      12S = 80
      16S = 40
      18S = 6
      28S = 2
    		   COI = 2
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 accepted
    T5010898

    R:1:1:1:0
    ⋄   ⋄   ⋄   ⋄   Oncorhynchus tshawytscha Species
    (4)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 266
      12S = 24
      16S = 9
      18S = 3
      28S = 0
    		   COI = 2
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 accepted
    T5010900

    R:1:1:1:0
    ⋄   ⋄   ⋄   Salmo Genus cummulative
    sub-totals
    ------->
    for this
    Genus    		 Total Species:   2
    Sp. w/COI-Barcodes:  2

    Total COI-Barcodes:   585    		 Total Species:   2
    Sp. w/COI-Barcodes:  1

    Total COI-Barcodes:   1    		 accepted
    T5006239

    R:1:1:1:0
    ⋄   ⋄   ⋄   ⋄   Salmo salar Species
    (5)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 337
      12S = 29
      16S = 38
      18S = 4
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 accepted
    T5012023

    R:1:1:1:0
    ⋄   ⋄   ⋄   ⋄   Salmo trutta Species
    (6)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 248
      12S = 22
      16S = 29
      18S = 6
      28S = 0
    		   COI = 1
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 accepted
    T5012032

    R:1:1:1:0
    ⋄   ⋄   ⋄   Salvelinus Genus cummulative
    sub-totals
    ------->
    for this
    Genus    		 Total Species:   3
    Sp. w/COI-Barcodes:  3

    Total COI-Barcodes:   236    		 Total Species:   3
    Sp. w/COI-Barcodes:  0

    Total COI-Barcodes:   0    		 accepted
    T5006240

    R:1:1:1:0
    ⋄   ⋄   ⋄   ⋄   Salvelinus alpinus Species
    (7)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 161
      12S = 115
      16S = 159
      18S = 2
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 accepted
    T5012036

    R:1:1:1:0
    ⋄   ⋄   ⋄   ⋄   ⋄   Salvelinus alpinus alpinus
    * All data are included in
    the Species level above.
    		 Subspecies
    		 COI
    12S
    16S
    18S
    28S
    		   COI = 10
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 accepted
    T5014005

    R:1:1:1:0
    ⋄   ⋄   ⋄   ⋄   Salvelinus fontinalis Species
    (8)    		 COI
    12S
    16S
    18S
    28S
    		   COI = 75
      12S = 9
      16S = 11
      18S = 1
      28S = 0
    		   COI = 0
      12S = 0
      16S = 0
      18S = 0
      28S = 0
    		 accepted
    T5012043

    R:1:1:1:0
    MZGdb Atlas v2.01   2022-Mar-10









    Thu Mar 10 12:15:14 EST 2022