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Branchiopoda of the ICES North Atlantic & inland Seas

There are 20 species of Branchiopoda that are commonly found in the ICES North Atlantic & inland Seas.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A		 All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 20 total species, 15 of these species (75%) have COI barcodes (from this or any ocean).
  • There are a total of 430 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
    • MODE
    B    		 Regional COI barcodes for this taxa group (includes only those collected in the ICES North Atlantic & inland Seas region):
  • Of the 20 total species, 10 of these species (50%) have ICES North Atlantic & inland Seas-collected COI barcodes.
  • There are a total of 145 "ICES North Atlantic & inland Seas-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
    • Uncoded
    Species    		 Of the 20 total species in this region, 5 species do not have any COI barcodes (from any region).

     Barcoding progress summary for the ICES North Atlantic & inland Seas region, out of a total of 20 possible species:
    • There are COI barcodes for 15 species ( 75% coverage ), of which 10 species have barcodes sampled inside this region ( 50% coverage ).
      •
    • There are 12S barcodes for 13 species ( 65% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 16 species ( 80% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 13 species ( 65% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 28S barcodes for 8 species ( 40% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Branchiopoda of the ICES North Atlantic & inland Seas
    MZGdb DATA FILES

    Database-Version:   v2023-m01-12    		 --->   Mode-A   <---

    COI barcodes = 430
    12S barcodes = 51
    16S barcodes = 51
    18S barcodes = 21
    28S barcodes = 18
    		 Mode-B

    COI barcodes = 145
    12S barcodes = 0
    16S barcodes = 0
    18S barcodes = 0
    28S barcodes = 0
    		 Mode-C

    COI records = 1729
    12S records = 345
    16S records = 336
    18S records = 34
    28S records = 41
    		 Mode-D

    COI records = 152
    12S records = 0
    16S records = 0
    18S records = 0
    28S records = 0
    FASTA file MZGdb fasta (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb fasta (mode-B)
    COI | n/d | n/d | n/d | n/d

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb fasta (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb fasta (mode-D)
    COI | n/d | n/d | n/d | n/d

    Genus-spp and species data
    from specific ocean     (mode-D)
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)    		 MZGdb Mothur (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb Mothur (mode-B)
    COI | n/d | n/d | n/d | n/d

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb Mothur (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb Mothur (mode-D)
    COI | n/d | n/d | n/d | n/d

    Genus-spp and species data
    from specific ocean     (mode-D)
    MZGdb v3.0

    "full format"

    go to
    Format Description    		CSV

    Excel-friendly full format
    comma-separated-values    		 MZGdb CSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb CSV (mode-B)
    COI | n/d | n/d | n/d | n/d

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb CSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb CSV (mode-D)
    COI | n/d | n/d | n/d | n/d

    Genus-spp and species data
    from specific ocean     (mode-D)
    PSV

    pipe-separated-values    		 MZGdb PSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb PSV (mode-B)
    COI | n/d | n/d | n/d | n/d

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb PSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb PSV (mode-D)
    COI | n/d | n/d | n/d | n/d

    Genus-spp and species data
    from specific ocean     (mode-D)


    MZGdb Atlas [ database-version = v2023-m01-12 ];   html-date = 2023-Jan-14









    Sat Jan 14 22:05:35 EST 2023