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Cyclopoida of the Mediterranean Sea

There are 105 species of Cyclopoida that are commonly found in the Mediterranean Sea.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A		 All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 105 total species, 30 of these species (28%) have COI barcodes (from this or any ocean).
  • There are a total of 400 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
    • MODE
    B    		 Regional COI barcodes for this taxa group (includes only those collected in the Mediterranean Sea region):
  • Of the 105 total species, 13 of these species (12%) have Mediterranean Sea-collected COI barcodes.
  • There are a total of 28 "Mediterranean Sea-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
    • Uncoded
    Species    		 Of the 105 total species in this region, 75 species do not have any COI barcodes (from any region).

     Barcoding progress summary for the Mediterranean Sea region, out of a total of 105 possible species:
    • There are COI barcodes for 30 species ( 28% coverage ), of which 13 species have barcodes sampled inside this region ( 12% coverage ).
      •
    • There are 12S barcodes for 19 species ( 18% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 2 species ( 1% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 25 species ( 23% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 28S barcodes for 18 species ( 17% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Cyclopoida of the Mediterranean Sea
    MZGdb DATA FILES

    Database-Version:   v2023-m01-12    		 --->   Mode-A   <---

    COI barcodes = 400
    12S barcodes = 36
    16S barcodes = 2
    18S barcodes = 53
    28S barcodes = 151
    		 Mode-B

    COI barcodes = 28
    12S barcodes = 36
    16S barcodes = 2
    18S barcodes = 0
    28S barcodes = 6
    		 Mode-C

    COI records = 445
    12S records = 44
    16S records = 3
    18S records = 75
    28S records = 167
    		 Mode-D

    COI records = 32
    12S records = 44
    16S records = 2
    18S records = 0
    28S records = 7
    FASTA file MZGdb fasta (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb fasta (mode-B)
    COI | 12S | 16S | n/d | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb fasta (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb fasta (mode-D)
    COI | 12S | 16S | n/d | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)    		 MZGdb Mothur (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb Mothur (mode-B)
    COI | 12S | 16S | n/d | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb Mothur (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb Mothur (mode-D)
    COI | 12S | 16S | n/d | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)
    MZGdb v3.0

    "full format"

    go to
    Format Description    		CSV

    Excel-friendly full format
    comma-separated-values    		 MZGdb CSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb CSV (mode-B)
    COI | 12S | 16S | n/d | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb CSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb CSV (mode-D)
    COI | 12S | 16S | n/d | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)
    PSV

    pipe-separated-values    		 MZGdb PSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb PSV (mode-B)
    COI | 12S | 16S | n/d | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb PSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb PSV (mode-D)
    COI | 12S | 16S | n/d | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)


    MZGdb Atlas [ database-version = v2023-m01-12 ];   html-date = 2023-Jan-14









    Sat Jan 14 22:40:09 EST 2023