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Cyclopoida of the ICES Open Ocean

There are 105 species of Cyclopoida that are commonly found in the ICES Open Ocean.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A
All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 105 total species, 23 of these species (21%) have COI barcodes (from this or any ocean).
  • There are a total of 473 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
  • MODE
    B
    Regional COI barcodes for this taxa group (includes only those collected in the ICES Open Ocean region):
  • Of the 105 total species, 10 of these species (9%) have ICES Open Ocean-collected COI barcodes.
  • There are a total of 140 "ICES Open Ocean-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
  • Uncoded
    Species
    Of the 105 total species in this region, 82 species do not have any COI barcodes (from any region).

    Barcoding progress summary for the ICES Open Ocean region, out of a total of 105 possible species:
    • There are COI barcodes for 23 species ( 21% coverage ), of which 10 species have barcodes sampled inside this region ( 9% coverage ).
    • There are 12S barcodes for 8 species ( 7% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 1 species ( 0% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 22 species ( 20% coverage ), of which 2 species have barcodes sampled inside this region ( 1% coverage ).
    • There are 28S barcodes for 18 species ( 17% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).


    click on map above to see a larger version


    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Cyclopoida of the ICES Open Ocean

    MZGdb DATA FILE Mode-A

    COI barcodes = 473
    12S barcodes = 25
    16S barcodes = 2
    18S barcodes = 74
    28S barcodes = 175
    Mode-B

    COI barcodes = 140
    12S barcodes = 0
    16S barcodes = 0
    18S barcodes = 11
    28S barcodes = 26
    FASTA format MZGfasta-coi__T4000232__i2000__A.fasta
    MZGfasta-12s__T4000232__i2000__A.fasta
    MZGfasta-16s__T4000232__i2000__A.fasta
    MZGfasta-18s__T4000232__i2000__A.fasta
    MZGfasta-28s__T4000232__i2000__A.fasta
    MZGfasta-coi__T4000232__i2000__B.fasta
    (no 12s data)
    (no 16s data)
    MZGfasta-18s__T4000232__i2000__B.fasta
    MZGfasta-28s__T4000232__i2000__B.fasta
    MOTHUR hierarchy tree

    paired to the FASTA file above
    MZGmothur-coi__T4000232__i2000__A.mothur
    MZGmothur-12s__T4000232__i2000__A.mothur
    MZGmothur-16s__T4000232__i2000__A.mothur
    MZGmothur-18s__T4000232__i2000__A.mothur
    MZGmothur-28s__T4000232__i2000__A.mothur
    MZGmothur-coi__T4000232__i2000__B.mothur
    (no 12s data)
    (no 16s data)
    MZGmothur-18s__T4000232__i2000__B.mothur
    MZGmothur-28s__T4000232__i2000__B.mothur
    MZGdb v2.1

    "full format"

    go to
    Format Description
    CSV

    Excel-friendly full format
    comma-separated-values
    MZGdata-coi__T4000232__i2000__A.csv
    MZGdata-12s__T4000232__i2000__A.csv
    MZGdata-16s__T4000232__i2000__A.csv
    MZGdata-18s__T4000232__i2000__A.csv
    MZGdata-28s__T4000232__i2000__A.csv
    MZGdata-coi__T4000232__i2000__B.csv
    (no 12s data)
    (no 16s data)
    MZGdata-18s__T4000232__i2000__B.csv
    MZGdata-28s__T4000232__i2000__B.csv
    PSV

    pipe-separated-values
    MZGdata-coi__T4000232__i2000__A.psv
    MZGdata-12s__T4000232__i2000__A.psv
    MZGdata-16s__T4000232__i2000__A.psv
    MZGdata-18s__T4000232__i2000__A.psv
    MZGdata-28s__T4000232__i2000__A.psv
    MZGdata-coi__T4000232__i2000__B.psv
    (no 12s data)
    (no 16s data)
    MZGdata-18s__T4000232__i2000__B.psv
    MZGdata-28s__T4000232__i2000__B.psv


    MZGdb Atlas v2.01   2022-Jun-07









    Tue Jun 7 09:03:35 EDT 2022