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Isopoda of the ICES Open Ocean

There are 374 species of Isopoda that are commonly found in the ICES Open Ocean.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A
All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 374 total species, 76 of these species (20%) have COI barcodes (from this or any ocean).
  • There are a total of 3599 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
  • MODE
    B
    Regional COI barcodes for this taxa group (includes only those collected in the ICES Open Ocean region):
  • Of the 374 total species, 56 of these species (14%) have ICES Open Ocean-collected COI barcodes.
  • There are a total of 529 "ICES Open Ocean-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
  • Uncoded
    Species
    Of the 374 total species in this region, 298 species do not have any COI barcodes (from any region).

    Barcoding progress summary for the ICES Open Ocean region, out of a total of 374 possible species:
    • There are COI barcodes for 76 species ( 20% coverage ), of which 56 species have barcodes sampled inside this region ( 14% coverage ).
    • There are 12S barcodes for 2 species ( 0% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 30 species ( 8% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 46 species ( 12% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 28S barcodes for 19 species ( 5% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).


    click on map above to see a larger version


    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Isopoda of the ICES Open Ocean

    MZGdb DATA FILE Mode-A

    COI barcodes = 3599
    12S barcodes = 166
    16S barcodes = 1956
    18S barcodes = 650
    28S barcodes = 230
    Mode-B

    COI barcodes = 529
    12S barcodes = 0
    16S barcodes = 223
    18S barcodes = 228
    28S barcodes = 75
    FASTA format MZGfasta-coi__T4000077__i2000__A.fasta
    MZGfasta-12s__T4000077__i2000__A.fasta
    MZGfasta-16s__T4000077__i2000__A.fasta
    MZGfasta-18s__T4000077__i2000__A.fasta
    MZGfasta-28s__T4000077__i2000__A.fasta
    MZGfasta-coi__T4000077__i2000__B.fasta
    (no 12s data)
    MZGfasta-16s__T4000077__i2000__B.fasta
    MZGfasta-18s__T4000077__i2000__B.fasta
    MZGfasta-28s__T4000077__i2000__B.fasta
    MOTHUR hierarchy tree

    paired to the FASTA file above
    MZGmothur-coi__T4000077__i2000__A.mothur
    MZGmothur-12s__T4000077__i2000__A.mothur
    MZGmothur-16s__T4000077__i2000__A.mothur
    MZGmothur-18s__T4000077__i2000__A.mothur
    MZGmothur-28s__T4000077__i2000__A.mothur
    MZGmothur-coi__T4000077__i2000__B.mothur
    (no 12s data)
    MZGmothur-16s__T4000077__i2000__B.mothur
    MZGmothur-18s__T4000077__i2000__B.mothur
    MZGmothur-28s__T4000077__i2000__B.mothur
    MZGdb v2.1

    "full format"

    go to
    Format Description
    CSV

    Excel-friendly full format
    comma-separated-values
    MZGdata-coi__T4000077__i2000__A.csv
    MZGdata-12s__T4000077__i2000__A.csv
    MZGdata-16s__T4000077__i2000__A.csv
    MZGdata-18s__T4000077__i2000__A.csv
    MZGdata-28s__T4000077__i2000__A.csv
    MZGdata-coi__T4000077__i2000__B.csv
    (no 12s data)
    MZGdata-16s__T4000077__i2000__B.csv
    MZGdata-18s__T4000077__i2000__B.csv
    MZGdata-28s__T4000077__i2000__B.csv
    PSV

    pipe-separated-values
    MZGdata-coi__T4000077__i2000__A.psv
    MZGdata-12s__T4000077__i2000__A.psv
    MZGdata-16s__T4000077__i2000__A.psv
    MZGdata-18s__T4000077__i2000__A.psv
    MZGdata-28s__T4000077__i2000__A.psv
    MZGdata-coi__T4000077__i2000__B.psv
    (no 12s data)
    MZGdata-16s__T4000077__i2000__B.psv
    MZGdata-18s__T4000077__i2000__B.psv
    MZGdata-28s__T4000077__i2000__B.psv


    MZGdb Atlas v2.01   2022-Jun-07









    Tue Jun 7 09:11:08 EDT 2022