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Mollusca-Cephalopoda of the ICES Open-ocean WEST

There are 102 species of Mollusca-Cephalopoda that are commonly found in the ICES Open-ocean WEST.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A		 All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 102 total species, 70 of these species (68%) have COI barcodes (from this or any ocean).
  • There are a total of 1465 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
    • MODE
    B    		 Regional COI barcodes for this taxa group (includes only those collected in the ICES Open-ocean WEST region):
  • Of the 102 total species, 7 of these species (6%) have ICES Open-ocean WEST-collected COI barcodes.
  • There are a total of 27 "ICES Open-ocean WEST-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
    • Uncoded
    Species    		 Of the 102 total species in this region, 32 species do not have any COI barcodes (from any region).

     Barcoding progress summary for the ICES Open-ocean WEST region, out of a total of 102 possible species:
    • There are COI barcodes for 70 species ( 68% coverage ), of which 7 species have barcodes sampled inside this region ( 6% coverage ).
      •
    • There are 12S barcodes for 30 species ( 29% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 59 species ( 57% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 48 species ( 47% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 28S barcodes for 47 species ( 46% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).
    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Mollusca-Cephalopoda of the ICES Open-ocean WEST
    MZGdb DATA FILES

    Database-Version:   v2023-m01-12    		 --->   Mode-A   <---

    COI barcodes = 1465
    12S barcodes = 121
    16S barcodes = 478
    18S barcodes = 62
    28S barcodes = 77
    		 Mode-B

    COI barcodes = 27
    12S barcodes = 1
    16S barcodes = 1
    18S barcodes = 0
    28S barcodes = 0
    		 Mode-C

    COI records = 1919
    12S records = 171
    16S records = 648
    18S records = 82
    28S records = 100
    		 Mode-D

    COI records = 40
    12S records = 1
    16S records = 3
    18S records = 0
    28S records = 0
    FASTA file MZGdb fasta (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb fasta (mode-B)
    COI | 12S | 16S | n/d | n/d

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb fasta (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb fasta (mode-D)
    COI | 12S | 16S | n/d | n/d

    Genus-spp and species data
    from specific ocean     (mode-D)
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)    		 MZGdb Mothur (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb Mothur (mode-B)
    COI | 12S | 16S | n/d | n/d

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb Mothur (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb Mothur (mode-D)
    COI | 12S | 16S | n/d | n/d

    Genus-spp and species data
    from specific ocean     (mode-D)
    MZGdb v3.0

    "full format"

    go to
    Format Description    		CSV

    Excel-friendly full format
    comma-separated-values    		 MZGdb CSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb CSV (mode-B)
    COI | 12S | 16S | n/d | n/d

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb CSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb CSV (mode-D)
    COI | 12S | 16S | n/d | n/d

    Genus-spp and species data
    from specific ocean     (mode-D)
    PSV

    pipe-separated-values    		 MZGdb PSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb PSV (mode-B)
    COI | 12S | 16S | n/d | n/d

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb PSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb PSV (mode-D)
    COI | 12S | 16S | n/d | n/d

    Genus-spp and species data
    from specific ocean     (mode-D)


    MZGdb Atlas [ database-version = v2023-m01-12 ];   html-date = 2023-Jan-14









    Sat Jan 14 22:35:15 EST 2023