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Calanidae of the US-NE-LME

There are 11 species of Calanidae that are commonly found in the US-NE-LME.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A
All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 11 total species, 11 of these species (100%) have COI barcodes (from this or any ocean).
  • There are a total of 1374 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
  • MODE
    B
    Regional COI barcodes for this taxa group (includes only those collected in the US-NE-LME region):
  • Of the 11 total species, 3 of these species (27%) have US-NE-LME-collected COI barcodes.
  • There are a total of 12 "US-NE-LME-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
  • Uncoded
    Species
    Of the 11 total species in this region, 0 species do not have any COI barcodes (from any region).

    Barcoding progress summary for the US-NE-LME region, out of a total of 11 possible species:
    • There are COI barcodes for 11 species ( 100% coverage ), of which 3 species have barcodes sampled inside this region ( 27% coverage ).
    • There are 12S barcodes for 5 species ( 45% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 9 species ( 81% coverage ), of which 1 species have barcodes sampled inside this region ( 9% coverage ).
    • There are 18S barcodes for 10 species ( 90% coverage ), of which 1 species have barcodes sampled inside this region ( 9% coverage ).
    • There are 28S barcodes for 9 species ( 81% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).


    click on map above to see a larger version


    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Calanidae of the US-NE-LME

    MZGdb DATA FILE Mode-A

    COI barcodes = 1374
    12S barcodes = 6
    16S barcodes = 1162
    18S barcodes = 36
    28S barcodes = 36
    Mode-B

    COI barcodes = 12
    12S barcodes = 0
    16S barcodes = 10
    18S barcodes = 1
    28S barcodes = 0
    FASTA format MZGfasta-coi__T4000003__i2110__A.fasta
    MZGfasta-12s__T4000003__i2110__A.fasta
    MZGfasta-16s__T4000003__i2110__A.fasta
    MZGfasta-18s__T4000003__i2110__A.fasta
    MZGfasta-28s__T4000003__i2110__A.fasta
    MZGfasta-coi__T4000003__i2110__B.fasta
    (no 12s data)
    MZGfasta-16s__T4000003__i2110__B.fasta
    MZGfasta-18s__T4000003__i2110__B.fasta
    (no 28s data)
    MOTHUR hierarchy tree

    paired to the FASTA file above
    MZGmothur-coi__T4000003__i2110__A.mothur
    MZGmothur-12s__T4000003__i2110__A.mothur
    MZGmothur-16s__T4000003__i2110__A.mothur
    MZGmothur-18s__T4000003__i2110__A.mothur
    MZGmothur-28s__T4000003__i2110__A.mothur
    MZGmothur-coi__T4000003__i2110__B.mothur
    (no 12s data)
    MZGmothur-16s__T4000003__i2110__B.mothur
    MZGmothur-18s__T4000003__i2110__B.mothur
    (no 28s data)
    MZGdb v2.1

    "full format"

    go to
    Format Description
    CSV

    Excel-friendly full format
    comma-separated-values
    MZGdata-coi__T4000003__i2110__A.csv
    MZGdata-12s__T4000003__i2110__A.csv
    MZGdata-16s__T4000003__i2110__A.csv
    MZGdata-18s__T4000003__i2110__A.csv
    MZGdata-28s__T4000003__i2110__A.csv
    MZGdata-coi__T4000003__i2110__B.csv
    (no 12s data)
    MZGdata-16s__T4000003__i2110__B.csv
    MZGdata-18s__T4000003__i2110__B.csv
    (no 28s data)
    PSV

    pipe-separated-values
    MZGdata-coi__T4000003__i2110__A.psv
    MZGdata-12s__T4000003__i2110__A.psv
    MZGdata-16s__T4000003__i2110__A.psv
    MZGdata-18s__T4000003__i2110__A.psv
    MZGdata-28s__T4000003__i2110__A.psv
    MZGdata-coi__T4000003__i2110__B.psv
    (no 12s data)
    MZGdata-16s__T4000003__i2110__B.psv
    MZGdata-18s__T4000003__i2110__B.psv
    (no 28s data)


    MZGdb Atlas v2.01   2022-Jun-07









    Tue Jun 7 09:01:33 EDT 2022