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Calanoida of the Mediterranean Sea

There are 193 species of Calanoida that are commonly found in the Mediterranean Sea.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A
All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 193 total species, 111 of these species (57%) have COI barcodes (from this or any ocean).
  • There are a total of 4027 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
  • MODE
    B
    Regional COI barcodes for this taxa group (includes only those collected in the Mediterranean Sea region):
  • Of the 193 total species, 34 of these species (17%) have Mediterranean Sea-collected COI barcodes.
  • There are a total of 277 "Mediterranean Sea-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
  • Uncoded
    Species
    Of the 193 total species in this region, 82 species do not have any COI barcodes (from any region).

    Barcoding progress summary for the Mediterranean Sea region, out of a total of 193 possible species:
    • There are COI barcodes for 111 species ( 57% coverage ), of which 34 species have barcodes sampled inside this region ( 17% coverage ).
    • There are 12S barcodes for 13 species ( 6% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 44 species ( 22% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 92 species ( 47% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 28S barcodes for 81 species ( 41% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ).

    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Calanoida of the Mediterranean Sea

    MZGdb DATA FILES

    Database-Version:   v2023-m01-12
    --->   Mode-A   <---

    COI barcodes = 4027
    12S barcodes = 13
    16S barcodes = 507
    18S barcodes = 255
    28S barcodes = 257
    Mode-B

    COI barcodes = 277
    12S barcodes = 0
    16S barcodes = 11
    18S barcodes = 2
    28S barcodes = 0
    Mode-C

    COI records = 4665
    12S records = 13
    16S records = 591
    18S records = 337
    28S records = 283
    Mode-D

    COI records = 292
    12S records = 0
    16S records = 11
    18S records = 2
    28S records = 0
    FASTA file MZGdb fasta (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb fasta (mode-B)

    COI | n/d | 16S | 18S | n/d

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb fasta (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb fasta (mode-D)

    COI | n/d | 16S | 18S | n/d

    Genus-spp and species data
    from specific ocean
    (mode-D)
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)
    MZGdb Mothur (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb Mothur (mode-B)

    COI | n/d | 16S | 18S | n/d

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb Mothur (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb Mothur (mode-D)

    COI | n/d | 16S | 18S | n/d

    Genus-spp and species data
    from specific ocean
    (mode-D)
    MZGdb v3.0

    "full format"

    go to
    Format Description
    CSV

    Excel-friendly full format
    comma-separated-values
    MZGdb CSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb CSV (mode-B)

    COI | n/d | 16S | 18S | n/d

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb CSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb CSV (mode-D)

    COI | n/d | 16S | 18S | n/d

    Genus-spp and species data
    from specific ocean
    (mode-D)
    PSV

    pipe-separated-values
    MZGdb PSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb PSV (mode-B)

    COI | n/d | 16S | 18S | n/d

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb PSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb PSV (mode-D)

    COI | n/d | 16S | 18S | n/d

    Genus-spp and species data
    from specific ocean
    (mode-D)


    MZGdb Atlas [ database-version = v2023-m01-12 ];   html-date = 2023-Jan-16









    Mon Jan 16 14:43:28 EST 2023