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Calanoida of the ICES Open Ocean

There are 292 species of Calanoida that are commonly found in the ICES Open Ocean.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A
All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 292 total species, 173 of these species (59%) have COI barcodes (from this or any ocean).
  • There are a total of 7894 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
  • MODE
    B
    Regional COI barcodes for this taxa group (includes only those collected in the ICES Open Ocean region):
  • Of the 292 total species, 69 of these species (23%) have ICES Open Ocean-collected COI barcodes.
  • There are a total of 858 "ICES Open Ocean-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
  • Uncoded
    Species
    Of the 292 total species in this region, 119 species do not have any COI barcodes (from any region).

    Barcoding progress summary for the ICES Open Ocean region, out of a total of 292 possible species:
    • There are COI barcodes for 173 species ( 59% coverage ), of which 69 species have barcodes sampled inside this region ( 23% coverage ).
    • There are 12S barcodes for 34 species ( 11% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 79 species ( 27% coverage ), of which 3 species have barcodes sampled inside this region ( 1% coverage ).
    • There are 18S barcodes for 132 species ( 45% coverage ), of which 3 species have barcodes sampled inside this region ( 1% coverage ).
    • There are 28S barcodes for 122 species ( 41% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).

    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Calanoida of the ICES Open Ocean

    MZGdb DATA FILES

    Database-Version:   v2023-m01-12
    --->   Mode-A   <---

    COI barcodes = 7894
    12S barcodes = 37
    16S barcodes = 1987
    18S barcodes = 346
    28S barcodes = 368
    Mode-B

    COI barcodes = 858
    12S barcodes = 0
    16S barcodes = 26
    18S barcodes = 60
    28S barcodes = 16
    Mode-C

    COI records = 8562
    12S records = 37
    16S records = 2071
    18S records = 432
    28S records = 397
    Mode-D

    COI records = 928
    12S records = 0
    16S records = 26
    18S records = 67
    28S records = 17
    FASTA file MZGdb fasta (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb fasta (mode-B)

    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb fasta (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb fasta (mode-D)

    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)
    MZGdb Mothur (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb Mothur (mode-B)

    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb Mothur (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb Mothur (mode-D)

    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)
    MZGdb v3.0

    "full format"

    go to
    Format Description
    CSV

    Excel-friendly full format
    comma-separated-values
    MZGdb CSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb CSV (mode-B)

    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb CSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb CSV (mode-D)

    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)
    PSV

    pipe-separated-values
    MZGdb PSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb PSV (mode-B)

    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb PSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb PSV (mode-D)

    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)


    MZGdb Atlas [ database-version = v2023-m01-12 ];   html-date = 2023-Jan-16









    Mon Jan 16 14:40:24 EST 2023