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Copepoda of the ICES Open-ocean EAST

There are 706 species of Copepoda that are commonly found in the ICES Open-ocean EAST.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A
All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 706 total species, 237 of these species (33%) have COI barcodes (from this or any ocean).
  • There are a total of 7416 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
  • MODE
    B
    Regional COI barcodes for this taxa group (includes only those collected in the ICES Open-ocean EAST region):
  • Of the 706 total species, 120 of these species (16%) have ICES Open-ocean EAST-collected COI barcodes.
  • There are a total of 1135 "ICES Open-ocean EAST-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
  • Uncoded
    Species
    Of the 706 total species in this region, 469 species do not have any COI barcodes (from any region).

    Barcoding progress summary for the ICES Open-ocean EAST region, out of a total of 706 possible species:
    • There are COI barcodes for 237 species ( 33% coverage ), of which 120 species have barcodes sampled inside this region ( 16% coverage ).
    • There are 12S barcodes for 39 species ( 5% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 72 species ( 10% coverage ), of which 2 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 163 species ( 23% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 28S barcodes for 149 species ( 21% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).

    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Copepoda of the ICES Open-ocean EAST

    MZGdb DATA FILES

    Database-Version:   v2023-m01-12
    --->   Mode-A   <---

    COI barcodes = 7416
    12S barcodes = 51
    16S barcodes = 1760
    18S barcodes = 413
    28S barcodes = 554
    Mode-B

    COI barcodes = 1135
    12S barcodes = 0
    16S barcodes = 14
    18S barcodes = 53
    28S barcodes = 33
    Mode-C

    COI records = 8512
    12S records = 59
    16S records = 1851
    18S records = 668
    28S records = 644
    Mode-D

    COI records = 1253
    12S records = 0
    16S records = 14
    18S records = 67
    28S records = 36
    FASTA file MZGdb fasta (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb fasta (mode-B)

    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb fasta (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb fasta (mode-D)

    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)
    MZGdb Mothur (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb Mothur (mode-B)

    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb Mothur (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb Mothur (mode-D)

    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)
    MZGdb v3.0

    "full format"

    go to
    Format Description
    CSV

    Excel-friendly full format
    comma-separated-values
    MZGdb CSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb CSV (mode-B)

    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb CSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb CSV (mode-D)

    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)
    PSV

    pipe-separated-values
    MZGdb PSV (mode-A)

    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean
    (mode-A)
    MZGdb PSV (mode-B)

    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean
    (mode-B)
    MZGdb PSV (mode-C)

    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean
    (mode-C)
    MZGdb PSV (mode-D)

    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean
    (mode-D)


    MZGdb Atlas [ database-version = v2023-m01-12 ];   html-date = 2023-Jan-16









    Mon Jan 16 14:47:09 EST 2023