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Copepoda of the ICES Open Ocean

There are 813 species of Copepoda that are commonly found in the ICES Open Ocean.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A
All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 813 total species, 280 of these species (34%) have COI barcodes (from this or any ocean).
  • There are a total of 10644 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
  • MODE
    B
    Regional COI barcodes for this taxa group (includes only those collected in the ICES Open Ocean region):
  • Of the 813 total species, 134 of these species (16%) have ICES Open Ocean-collected COI barcodes.
  • There are a total of 1447 "ICES Open Ocean-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
  • Uncoded
    Species
    Of the 813 total species in this region, 533 species do not have any COI barcodes (from any region).

    Barcoding progress summary for the ICES Open Ocean region, out of a total of 813 possible species:
    • There are COI barcodes for 280 species ( 34% coverage ), of which 134 species have barcodes sampled inside this region ( 16% coverage ).
    • There are 12S barcodes for 43 species ( 5% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 86 species ( 10% coverage ), of which 3 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 188 species ( 23% coverage ), of which 3 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 28S barcodes for 165 species ( 20% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).


    click on map above to see a larger version


    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Copepoda of the ICES Open Ocean

    MZGdb DATA FILE Mode-A

    COI barcodes = 10644
    12S barcodes = 68
    16S barcodes = 2338
    18S barcodes = 729
    28S barcodes = 695
    Mode-B

    COI barcodes = 1447
    12S barcodes = 0
    16S barcodes = 26
    18S barcodes = 82
    28S barcodes = 43
    FASTA format MZGfasta-coi__T4000001__i2000__A.fasta
    MZGfasta-12s__T4000001__i2000__A.fasta
    MZGfasta-16s__T4000001__i2000__A.fasta
    MZGfasta-18s__T4000001__i2000__A.fasta
    MZGfasta-28s__T4000001__i2000__A.fasta
    MZGfasta-coi__T4000001__i2000__B.fasta
    (no 12s data)
    MZGfasta-16s__T4000001__i2000__B.fasta
    MZGfasta-18s__T4000001__i2000__B.fasta
    MZGfasta-28s__T4000001__i2000__B.fasta
    MOTHUR hierarchy tree

    paired to the FASTA file above
    MZGmothur-coi__T4000001__i2000__A.mothur
    MZGmothur-12s__T4000001__i2000__A.mothur
    MZGmothur-16s__T4000001__i2000__A.mothur
    MZGmothur-18s__T4000001__i2000__A.mothur
    MZGmothur-28s__T4000001__i2000__A.mothur
    MZGmothur-coi__T4000001__i2000__B.mothur
    (no 12s data)
    MZGmothur-16s__T4000001__i2000__B.mothur
    MZGmothur-18s__T4000001__i2000__B.mothur
    MZGmothur-28s__T4000001__i2000__B.mothur
    MZGdb v2.1

    "full format"

    go to
    Format Description
    CSV

    Excel-friendly full format
    comma-separated-values
    MZGdata-coi__T4000001__i2000__A.csv
    MZGdata-12s__T4000001__i2000__A.csv
    MZGdata-16s__T4000001__i2000__A.csv
    MZGdata-18s__T4000001__i2000__A.csv
    MZGdata-28s__T4000001__i2000__A.csv
    MZGdata-coi__T4000001__i2000__B.csv
    (no 12s data)
    MZGdata-16s__T4000001__i2000__B.csv
    MZGdata-18s__T4000001__i2000__B.csv
    MZGdata-28s__T4000001__i2000__B.csv
    PSV

    pipe-separated-values
    MZGdata-coi__T4000001__i2000__A.psv
    MZGdata-12s__T4000001__i2000__A.psv
    MZGdata-16s__T4000001__i2000__A.psv
    MZGdata-18s__T4000001__i2000__A.psv
    MZGdata-28s__T4000001__i2000__A.psv
    MZGdata-coi__T4000001__i2000__B.psv
    (no 12s data)
    MZGdata-16s__T4000001__i2000__B.psv
    MZGdata-18s__T4000001__i2000__B.psv
    MZGdata-28s__T4000001__i2000__B.psv


    MZGdb Atlas v2.01   2022-Oct-12









    Wed Oct 12 12:11:06 EDT 2022