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Copepoda of the ICES Open Ocean

There are 813 species of Copepoda that are commonly found in the ICES Open Ocean.

Information on the COI barcoding status of these species is presented in the table below.
MODE
A		 All available COI barcodes for this taxa group (collected from any ocean and/or without geo-referencing):
  • Of the 813 total species, 277 of these species (34%) have COI barcodes (from this or any ocean).
  • There are a total of 9347 "any ocean" COI barcode records available for this ocean and taxa group.
  • All available taxa group COI barcodes will be included in the Mode A downloads.
    • MODE
    B    		 Regional COI barcodes for this taxa group (includes only those collected in the ICES Open Ocean region):
  • Of the 813 total species, 133 of these species (16%) have ICES Open Ocean-collected COI barcodes.
  • There are a total of 1354 "ICES Open Ocean-collected" COI barcodes available for this taxa group.
  • In the map to the right, Red Stars show sampling locations of the COI barcodes in the Mode B download.
    • Uncoded
    Species    		 Of the 813 total species in this region, 536 species do not have any COI barcodes (from any region).

     Barcoding progress summary for the ICES Open Ocean region, out of a total of 813 possible species:
    • There are COI barcodes for 277 species ( 34% coverage ), of which 133 species have barcodes sampled inside this region ( 16% coverage ).
      •
    • There are 12S barcodes for 43 species ( 5% coverage ), of which 0 species have barcodes sampled inside this region ( 0% coverage ). 
    • There are 16S barcodes for 84 species ( 10% coverage ), of which 3 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 18S barcodes for 188 species ( 23% coverage ), of which 3 species have barcodes sampled inside this region ( 0% coverage ).
    • There are 28S barcodes for 166 species ( 20% coverage ), of which 1 species have barcodes sampled inside this region ( 0% coverage ).
    Change Region   [ ICES North Atlantic & inland Seas ] [ ICES open-ocean Only ] [ Baltic Sea ] [ Mediterranean Sea ]
    [ ICES open-ocean WEST ] [ US-NE-LME ] [ CA-Scotian ] [ CA-Newfoundland-shelf ]
    [ ICES open-ocean EAST ] [ Norwegian-Sea ] [ North-Sea ] [ Ireland ] [ Iberian-Shelf ]
    -----> Click here to go back to the Group Summary page. <-----


    Copepoda of the ICES Open Ocean
    MZGdb DATA FILES

    Database-Version:   v2023-m01-12    		 --->   Mode-A   <---

    COI barcodes = 9347
    12S barcodes = 59
    16S barcodes = 2245
    18S barcodes = 466
    28S barcodes = 596
    		 Mode-B

    COI barcodes = 1354
    12S barcodes = 0
    16S barcodes = 26
    18S barcodes = 64
    28S barcodes = 40
    		 Mode-C

    COI records = 10690
    12S records = 68
    16S records = 2338
    18S records = 730
    28S records = 692
    		 Mode-D

    COI records = 1496
    12S records = 0
    16S records = 26
    18S records = 82
    28S records = 43
    FASTA file MZGdb fasta (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb fasta (mode-B)
    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb fasta (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb fasta (mode-D)
    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)
    Mothur-formatted
    Taxonomic Hierarchy file

    (paired with FASTA file above)    		 MZGdb Mothur (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb Mothur (mode-B)
    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb Mothur (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb Mothur (mode-D)
    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)
    MZGdb v3.0

    "full format"

    go to
    Format Description    		CSV

    Excel-friendly full format
    comma-separated-values    		 MZGdb CSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb CSV (mode-B)
    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb CSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb CSV (mode-D)
    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)
    PSV

    pipe-separated-values    		 MZGdb PSV (mode-A)
    COI | 12S | 16S | 18S | 28S

    True "barcode" (species-only) data
    from ANY ocean     (mode-A)     		MZGdb PSV (mode-B)
    COI | n/d | 16S | 18S | 28S

    True "barcode" (species-only) data
    from specific ocean     (mode-B)     		MZGdb PSV (mode-C)
    COI | 12S | 16S | 18S | 28S

    Genus-spp and species data
    from ANY ocean     (mode-C)     		MZGdb PSV (mode-D)
    COI | n/d | 16S | 18S | 28S

    Genus-spp and species data
    from specific ocean     (mode-D)


    MZGdb Atlas [ database-version = v2023-m01-12 ];   html-date = 2023-Jan-16









    Mon Jan 16 14:42:35 EST 2023