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All Invertebrates of the ICES Open-ocean WEST

[   ICES North Atlantic & inland Seas   ]
[   Open-ocean Only   ]
[   Open-ocean WEST   ]
[   Open-ocean EAST   ]
[   Baltic Sea   ]
[   Mediterranean Sea   ]
[   North-Sea   ]
[   Ireland   ]
[   Norwegian-Sea   ]
[   Iberian-Shelf   ]
[   US-NE-LME   ]
[   CA-Scotian   ]
[   CA-Newfoundland-shelf   ]


The data files below are full-taxa compilations that contain all taxa groups.   If you only want data from a single taxa group
(e.g., only barcodes for copepods or pteropods), follow the taxa group links found under main map pages.

The "All Invertebrates" files contain data from all of the zooplankton (crustacean+non-crustacean) and benthic taxa groups and subgroups.
The "All Vertebrates" files contain data from all of the fish and marine mammal taxa groups and subgroups.
The "All Marine Fauna Combo" files contain all data from the All Invertebrates and the All Vertebrates combined files.

The "World (All-World-Oceans)" geographic region includes data from all of the other ocean and seas sub-regions.

The "Mode-A" files contain species-only barcodes for species found in the current ocean, but those sequences may come from any other ocean.
The "Mode-B" files contain species-only barcodes sampled only in the current ocean for species found in the current ocean.
The "Mode-C" files contain genus and/or species sequences for species found in the current ocean, but those sequences may come from any other ocean.
The "Mode-D" files contain genus and/or species sequences sampled only in the current ocean for species found in the current ocean.

The entire MZGdb database is therefore available via the "All Plankton Combo (All-World-Oceans) Mode-A" data files.

MZGdb DATA FILES

Database-Version:   v2023-m01-12
Mode-A

COI barcodes = 52760
12s barcodes = 1116
16s barcodes = 12193
18s barcodes = 2807
28s barcodes = 2173
Mode-B

COI barcodes = 5939
12s barcodes = 3
16s barcodes = 202
18s barcodes = 78
28s barcodes = 39
Mode-C

COI barcodes = 78678
12s barcodes = 2118
16s barcodes = 19392
18s barcodes = 5682
28s barcodes = 4896
Mode-D

COI barcodes = 7196
12s barcodes = 5
16s barcodes = 237
18s barcodes = 102
28s barcodes = 93
FASTA file MZGdb fasta (mode-A)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean
(mode-A)
MZGdb fasta (mode-B)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from specific ocean
(mode-B)
MZGdb fasta (mode-C)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean
(mode-C)
MZGdb fasta (mode-D)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from specific ocean
(mode-D)
Mothur-formatted
Taxonomic Hierarchy file

(paired with FASTA file above)
MZGdb Mothur (mode-A)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean
(mode-A)
MZGdb Mothur (mode-B)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from specific ocean
(mode-B)
MZGdb Mothur (mode-C)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean
(mode-C)
MZGdb Mothur (mode-D)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from specific ocean
(mode-D)
MZGdb v3.0

"full format"

go to
Format Description
CSV

Excel-friendly full format
comma-separated-values
MZGdb CSV (mode-A)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean
(mode-A)
MZGdb CSV (mode-B)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from specific ocean
(mode-B)
MZGdb CSV (mode-C)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean
(mode-C)
MZGdb CSV (mode-D)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from specific ocean
(mode-D)
PSV

pipe-separated-values
MZGdb PSV (mode-A)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean
(mode-A)
MZGdb PSV (mode-B)

COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from specific ocean
(mode-B)
MZGdb PSV (mode-C)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean
(mode-C)
MZGdb PSV (mode-D)

COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from specific ocean
(mode-D)











Thu Jan 19 07:42:02 EST 2023